{"id":"https://openalex.org/W3012439731","doi":"https://doi.org/10.1109/access.2020.2979888","title":"MF-EFP: Predicting Multi-Functional Enzymes Function Using Improved Hybrid Multi-Label Classifier","display_name":"MF-EFP: Predicting Multi-Functional Enzymes Function Using Improved Hybrid Multi-Label Classifier","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3012439731","doi":"https://doi.org/10.1109/access.2020.2979888","mag":"3012439731"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2979888","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2979888","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09032150.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09032150.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033602780","display_name":"Xuan Xiao","orcid":"https://orcid.org/0000-0003-1016-7544"},"institutions":[{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan Xiao","raw_affiliation_strings":["Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China","institution_ids":["https://openalex.org/I105991555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052263000","display_name":"Li-Wen Duan","orcid":null},"institutions":[{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li-Wen Duan","raw_affiliation_strings":["Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China","institution_ids":["https://openalex.org/I105991555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040431394","display_name":"Guangfu Xue","orcid":"https://orcid.org/0000-0002-5718-2314"},"institutions":[{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guang-Fu Xue","raw_affiliation_strings":["Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China"],"raw_orcid":"https://orcid.org/0000-0002-5718-2314","affiliations":[{"raw_affiliation_string":"Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China","institution_ids":["https://openalex.org/I105991555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100779479","display_name":"Gang Chen","orcid":"https://orcid.org/0000-0003-3363-0802"},"institutions":[{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gang Chen","raw_affiliation_strings":["Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China","institution_ids":["https://openalex.org/I105991555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383521","display_name":"Pu Wang","orcid":"https://orcid.org/0000-0002-6552-0643"},"institutions":[{"id":"https://openalex.org/I4210113795","display_name":"Hubei University of Arts and Science","ror":"https://ror.org/0212jcf64","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113795"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pu Wang","raw_affiliation_strings":["Computer School, Hubei University of Arts and Science, Xiangyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer School, Hubei University of Arts and Science, Xiangyang, China","institution_ids":["https://openalex.org/I4210113795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032406968","display_name":"Wang\u2010Ren Qiu","orcid":"https://orcid.org/0000-0001-7659-8553"},"institutions":[{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang-Ren Qiu","raw_affiliation_strings":["Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China"],"raw_orcid":"https://orcid.org/0000-0001-7659-8553","affiliations":[{"raw_affiliation_string":"Computer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China","institution_ids":["https://openalex.org/I105991555"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.3255,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.55279383,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":null,"first_page":"50276","last_page":"50284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9563000202178955,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6816595196723938},{"id":"https://openalex.org/keywords/multi-label-classification","display_name":"Multi-label classification","score":0.6675893068313599},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6278946399688721},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5010673999786377},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49890589714050293},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3241167366504669}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6816595196723938},{"id":"https://openalex.org/C2776482837","wikidata":"https://www.wikidata.org/wiki/Q3553958","display_name":"Multi-label classification","level":2,"score":0.6675893068313599},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6278946399688721},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5010673999786377},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49890589714050293},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3241167366504669}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2979888","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2979888","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09032150.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:32a12ec1d4e943a698e601d3c486cd9b","is_oa":true,"landing_page_url":"https://doaj.org/article/32a12ec1d4e943a698e601d3c486cd9b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 50276-50284 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2979888","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2979888","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09032150.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1345789049","display_name":null,"funder_award_id":"GJJ160866","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1528224063","display_name":null,"funder_award_id":"20171ACB20023","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1704142899","display_name":null,"funder_award_id":"2018-3-3","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2083062581","display_name":"\u57fa\u4e8e\u4e0d\u5e73\u8861\u591a\u6807\u7b7e\u6570\u636e\u5904\u7406\u6280\u672f\u7684\u86cb\u767d\u8d28\u4fee\u9970\u82e5\u5e72\u95ee\u9898\u7814\u7a76","funder_award_id":"31760315","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2181162092","display_name":null,"funder_award_id":"2018-3-3","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G253460150","display_name":null,"funder_award_id":"61841104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2742470068","display_name":null,"funder_award_id":"2018-3-3","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G280471918","display_name":null,"funder_award_id":"61841104","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G2814149187","display_name":null,"funder_award_id":"GJJ180703","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4150381309","display_name":null,"funder_award_id":"GJJ160866","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G4328379056","display_name":null,"funder_award_id":"GJJ160866","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G4731719168","display_name":null,"funder_award_id":"31760315","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G6497582711","display_name":null,"funder_award_id":"2018-3","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6815744869","display_name":null,"funder_award_id":"31860312","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G7390724047","display_name":null,"funder_award_id":"31860312","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G7511606564","display_name":null,"funder_award_id":"GJJ180703","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G7563554493","display_name":"\u96c6\u6210\u5b66\u4e60\u6846\u67b6\u4e0b\u7684DNA\u542f\u52a8\u5b50\u5206\u7c7b\u53ca\u5176\u7532\u57fa\u5316\u9884\u6d4b\u7814\u7a76","funder_award_id":"31860312","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7872071068","display_name":null,"funder_award_id":"20171ACB20023","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G8110286795","display_name":null,"funder_award_id":"20171ACB20023","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"},{"id":"https://openalex.org/G8454877854","display_name":null,"funder_award_id":"GJJ180703","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G8895265575","display_name":null,"funder_award_id":"61841104","funder_id":"https://openalex.org/F4320322665","funder_display_name":"Natural Science Foundation of Jiangxi Province"},{"id":"https://openalex.org/G998862738","display_name":null,"funder_award_id":"31760315","funder_id":"https://openalex.org/F4320325626","funder_display_name":"Education Department of Jiangxi Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322665","display_name":"Natural Science Foundation of Jiangxi Province","ror":null},{"id":"https://openalex.org/F4320325626","display_name":"Education Department of Jiangxi Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3012439731.pdf","grobid_xml":"https://content.openalex.org/works/W3012439731.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W243604766","https://openalex.org/W1589616192","https://openalex.org/W1976656799","https://openalex.org/W1987134040","https://openalex.org/W2024572834","https://openalex.org/W2026666393","https://openalex.org/W2049617155","https://openalex.org/W2056192318","https://openalex.org/W2077467360","https://openalex.org/W2090561245","https://openalex.org/W2096294058","https://openalex.org/W2104812418","https://openalex.org/W2119988314","https://openalex.org/W2125546020","https://openalex.org/W2131366108","https://openalex.org/W2133215312","https://openalex.org/W2189550636","https://openalex.org/W2334475967","https://openalex.org/W2340907198","https://openalex.org/W2343191987","https://openalex.org/W2513978719","https://openalex.org/W2598525602","https://openalex.org/W2766352633","https://openalex.org/W2784083480","https://openalex.org/W2908663744","https://openalex.org/W6686774978"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Predicting":[0],"enzymes":[1,11,19,46,113,151],"function":[2,25,32],"is":[3,210],"an":[4],"important":[5],"and":[6,70,96,168,177,202],"difficult":[7],"problem,":[8],"particularly":[9],"when":[10],"may":[12],"have":[13,21,193],"the":[14,29,41,65,91,101,116,188,194,214,217],"multiplex":[15],"character,":[16],"i.e.,":[17],"some":[18],"simultaneously":[20],"two":[22],"or":[23],"three":[24],"classes.":[26],"Most":[27],"of":[28,59,112,150],"existing":[30,189],"enzyme":[31],"predictor":[33],"can":[34,85,186],"only":[35],"be":[36,49,86],"used":[37,87],"to":[38,88,158,196,213],"deal":[39,89,197],"with":[40,90,106,198],"mono-functional":[42,95],"enzymes.":[43,98],"Actually,":[44],"multi-functional":[45,97],"should":[47],"not":[48],"ignored":[50],"because":[51],"they":[52],"usually":[53],"possess":[54],"diverse":[55],"biological":[56],"functions":[57],"worthy":[58],"our":[60],"special":[61],"notice.":[62],"By":[63],"introducing":[64],"\u201cimproved":[66],"Hybrid":[67],"Multi-label":[68],"Classifier\u201d":[69],"\u201cneighbor":[71],"score\u201d,":[72],"a":[73,109,162,200,206],"new":[74],"predictor,":[75],"called":[76],"<bold":[77],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[78,220],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">MF-EFP</b>":[79],",":[80],"has":[81,153],"been":[82],"developed":[83],"that":[84,184,191],"systems":[92],"containing":[93],"both":[94],"As":[99,205],"demonstration,":[100],"jackknife":[102],"cross-validation":[103],"was":[104,175],"performed":[105],"MF-EFP":[107,174,185,209],"on":[108],"benchmark":[110],"dataset":[111],"classified":[114],"into":[115],"following":[117],"7":[118],"functional":[119],"classes:":[120],"(1)":[121],"EC":[122,126,130,134,138,142],"1":[123],"Oxidoreductase,":[124],"(2)":[125],"2":[127],"Transferase,":[128],"(3)":[129],"3":[131],"Hydrolase,":[132],"(4)":[133],"4":[135],"Lyase,":[136],"(5)":[137],"5":[139],"Isomerase,":[140],"(6)":[141],"6":[143],"Ligase,":[144],"(7)":[145],"EC7":[146],"Translocases,":[147],"where":[148],"none":[149],"included":[152],"\u226590%":[154],"pairwise":[155],"sequence":[156],"identity":[157],"any":[159],"other":[160],"in":[161],"same":[163],"subset.":[164],"The":[165],"subset":[166],"accuracy":[167],"average":[169],"precision":[170],"thus":[171],"obtained":[172],"by":[173],"85.62%":[176],"94.16%":[178],"respectively.":[179],"Extensive":[180],"experiments":[181],"also":[182,192],"show":[183],"outperform":[187],"predictors":[190],"capacity":[195],"such":[199],"complicated":[201],"stringent":[203],"system.":[204],"user-friendly":[207],"web-server,":[208],"freely":[211],"accessible":[212],"public":[215],"at":[216],"web-site":[218],"<uri":[219],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">http://www.jci-bioinfo.cn/MF-EFP</uri>":[221],".":[222]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
