{"id":"https://openalex.org/W3005806187","doi":"https://doi.org/10.1109/access.2020.2972922","title":"A Novel Method to Predict Essential Proteins Based on Diffusion Distance Networks","display_name":"A Novel Method to Predict Essential Proteins Based on Diffusion Distance Networks","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3005806187","doi":"https://doi.org/10.1109/access.2020.2972922","mag":"3005806187"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2972922","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2972922","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08990127.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08990127.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054410805","display_name":"Bihai Zhao","orcid":"https://orcid.org/0000-0003-0870-7468"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bihai Zhao","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","Department of Biological and Environmental Engineering, Hunan Provincial Key Laboratory of Nutrition and Quality Control of Aquatic Animals, Changsha University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Department of Biological and Environmental Engineering, Hunan Provincial Key Laboratory of Nutrition and Quality Control of Aquatic Animals, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100611801","display_name":"Xiao Han","orcid":"https://orcid.org/0000-0002-5151-6547"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Han","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036346344","display_name":"Xiner Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiner Liu","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041393618","display_name":"Yingchun Luo","orcid":"https://orcid.org/0000-0001-8744-6299"},"institutions":[{"id":"https://openalex.org/I4210132733","display_name":"Hunan Children's Hospital","ror":"https://ror.org/03e207173","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210132733"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingchun Luo","raw_affiliation_strings":["Department of Ultrasound, Hunan Province Women and Children\u2019s Hospital, Changsha, China","Department of Ultrasound, Hunan Province Women and Children's Hospital, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Department of Ultrasound, Hunan Province Women and Children\u2019s Hospital, Changsha, China","institution_ids":["https://openalex.org/I4210132733"]},{"raw_affiliation_string":"Department of Ultrasound, Hunan Province Women and Children's Hospital, Changsha, China","institution_ids":["https://openalex.org/I4210132733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075079013","display_name":"Sai Hu","orcid":"https://orcid.org/0000-0001-8911-3797"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sai Hu","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100419481","display_name":"Zhihong Zhang","orcid":"https://orcid.org/0009-0006-0496-452X"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihong Zhang","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100710637","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-5065-8447"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5054410805"],"corresponding_institution_ids":["https://openalex.org/I198357462"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.9195,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.7253194,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":null,"first_page":"29385","last_page":"29394"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6988266706466675},{"id":"https://openalex.org/keywords/jackknife-resampling","display_name":"Jackknife resampling","score":0.4334448575973511},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4048343896865845},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3804444372653961},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3301180601119995},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14235058426856995}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6988266706466675},{"id":"https://openalex.org/C81790035","wikidata":"https://www.wikidata.org/wiki/Q847158","display_name":"Jackknife resampling","level":3,"score":0.4334448575973511},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4048343896865845},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3804444372653961},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3301180601119995},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14235058426856995},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2972922","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2972922","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08990127.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:81dd99aff6d94e8d9c8f0e501b98b378","is_oa":true,"landing_page_url":"https://doaj.org/article/81dd99aff6d94e8d9c8f0e501b98b378","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 29385-29394 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2972922","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2972922","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08990127.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1023919524","display_name":null,"funder_award_id":", Grant","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3039738910","display_name":null,"funder_award_id":"61772089","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3107359239","display_name":null,"funder_award_id":"61873221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4463221698","display_name":null,"funder_award_id":"2019JJ40325","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G4652393474","display_name":null,"funder_award_id":"61672447","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4765083334","display_name":null,"funder_award_id":"618732","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G636293411","display_name":null,"funder_award_id":"2018JJ4058","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6794736675","display_name":null,"funder_award_id":"2018JJ3565","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G7105814720","display_name":null,"funder_award_id":"2018JJ4058","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G8156325085","display_name":null,"funder_award_id":"2018JJ3566","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3005806187.pdf","grobid_xml":"https://content.openalex.org/works/W3005806187.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1709660540","https://openalex.org/W1970173121","https://openalex.org/W1986310535","https://openalex.org/W1988496202","https://openalex.org/W1996612368","https://openalex.org/W1999808266","https://openalex.org/W2007245700","https://openalex.org/W2017975254","https://openalex.org/W2021149413","https://openalex.org/W2070575931","https://openalex.org/W2072602645","https://openalex.org/W2074443723","https://openalex.org/W2082202339","https://openalex.org/W2082565035","https://openalex.org/W2088590769","https://openalex.org/W2089125183","https://openalex.org/W2105089945","https://openalex.org/W2115746733","https://openalex.org/W2116117181","https://openalex.org/W2119114096","https://openalex.org/W2150649057","https://openalex.org/W2152285853","https://openalex.org/W2155320925","https://openalex.org/W2162891889","https://openalex.org/W2206052936","https://openalex.org/W2274610632","https://openalex.org/W2560218177","https://openalex.org/W2780936345","https://openalex.org/W2793168264","https://openalex.org/W2885592407","https://openalex.org/W2910645973","https://openalex.org/W2912802963","https://openalex.org/W2915554882","https://openalex.org/W2945677156","https://openalex.org/W2967960129","https://openalex.org/W2972223935","https://openalex.org/W2982608875","https://openalex.org/W2989977616","https://openalex.org/W2999995105"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4248520104","https://openalex.org/W4205886662","https://openalex.org/W4362236462","https://openalex.org/W2373289085","https://openalex.org/W1569344764","https://openalex.org/W2124181495","https://openalex.org/W2592875554"],"abstract_inverted_index":{"Essential":[0],"proteins":[1,57,61,82,95,103],"are":[2,131,157],"important":[3],"for":[4],"the":[5,23,54,90,135,155],"survival":[6],"and":[7,46,83,114,128,154],"reproduction":[8],"of":[9,25,28,87,93,137],"organisms.":[10],"Many":[11],"computational":[12],"methods":[13,118],"have":[14,40],"been":[15,35],"proposed":[16,99],"to":[17,22,119,133],"identify":[18],"essential":[19,60,94,102,121],"proteins,":[20],"due":[21],"production":[24],"vast":[26],"amounts":[27],"protein-protein":[29],"interaction":[30],"(PPI)":[31],"data.":[32],"It":[33],"has":[34],"demonstrated":[36],"that":[37,143],"PPI":[38,63,77],"networks":[39],"graph-theoretic":[41],"characteristics":[42,79],"as":[43],"so-called":[44],"small-world":[45],"scale-free.":[47],"The":[48,123,151],"traditional":[49],"metrics":[50],"cannot":[51],"really":[52],"reflect":[53],"relationship":[55],"between":[56],"when":[58],"identifying":[59],"from":[62],"networks.":[64],"In":[65],"this":[66],"paper,":[67],"we":[68,98],"construct":[69],"a":[70,100],"diffusion":[71],"distance":[72],"network":[73],"(DSN)":[74],"by":[75],"combining":[76],"topology":[78],"with":[80],"orthologous":[81],"sub-cellular":[84],"localization":[85],"information":[86],"proteins.":[88,122],"Taking":[89],"modularity":[91],"feature":[92],"into":[96],"account,":[97],"new":[101],"prediction":[104],"method":[105,113,145],"based":[106],"on":[107,130],"DSN.":[108],"We":[109],"employed":[110],"our":[111,144],"DSN":[112],"ten":[115,147],"other":[116,148],"state-of-the-art":[117],"predict":[120],"precision-recall":[124],"curve,":[125],"jackknife":[126],"methodology":[127],"so":[129],"used":[132],"test":[134],"performance":[136],"these":[138],"methods.":[139,150],"Experimental":[140],"results":[141],"show":[142],"outperform":[146],"competitive":[149],"row":[152],"data":[153],"software":[156],"freely":[158],"available":[159],"at:":[160],"https://github.com/husaiccsu/DSN.":[161]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
