{"id":"https://openalex.org/W2998522041","doi":"https://doi.org/10.1109/access.2019.2963537","title":"Two New Methods for Identifying Essential Proteins Based on the Protein Complexes and Topological Properties","display_name":"Two New Methods for Identifying Essential Proteins Based on the Protein Complexes and Topological Properties","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W2998522041","doi":"https://doi.org/10.1109/access.2019.2963537","mag":"2998522041"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2963537","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2963537","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08947996.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08947996.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Pengli Lu","orcid":"https://orcid.org/0000-0002-8155-2098"},"institutions":[{"id":"https://openalex.org/I22716506","display_name":"Lanzhou University of Technology","ror":"https://ror.org/03panb555","country_code":"CN","type":"education","lineage":["https://openalex.org/I22716506"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengli Lu","raw_affiliation_strings":["School of Computer and Communication, Lanzhou University of Technology, Lanzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-8155-2098","affiliations":[{"raw_affiliation_string":"School of Computer and Communication, Lanzhou University of Technology, Lanzhou, China","institution_ids":["https://openalex.org/I22716506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079241891","display_name":"Jingjuan Yu","orcid":"https://orcid.org/0000-0001-5388-2228"},"institutions":[{"id":"https://openalex.org/I22716506","display_name":"Lanzhou University of Technology","ror":"https://ror.org/03panb555","country_code":"CN","type":"education","lineage":["https://openalex.org/I22716506"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjuan Yu","raw_affiliation_strings":["School of Computer and Communication, Lanzhou University of Technology, Lanzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Communication, Lanzhou University of Technology, Lanzhou, China","institution_ids":["https://openalex.org/I22716506"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I22716506"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.2441,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.5135674,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":null,"first_page":"9578","last_page":"9586"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/betweenness-centrality","display_name":"Betweenness centrality","score":0.9134041666984558},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.8334139585494995},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6225956082344055},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5757051706314087},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4787999093532562},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4761495590209961},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.45257657766342163},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20899948477745056},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12510588765144348},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12207472324371338},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.0711301863193512}],"concepts":[{"id":"https://openalex.org/C117045392","wikidata":"https://www.wikidata.org/wiki/Q4899215","display_name":"Betweenness centrality","level":3,"score":0.9134041666984558},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.8334139585494995},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6225956082344055},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5757051706314087},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4787999093532562},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4761495590209961},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.45257657766342163},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20899948477745056},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12510588765144348},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12207472324371338},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0711301863193512},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2019.2963537","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2963537","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08947996.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:/ir.lzu.edu.cn/:262010/441571","is_oa":true,"landing_page_url":"http://ir.lzu.edu.cn/handle/262010/441571","pdf_url":null,"source":{"id":"https://openalex.org/S4406923049","display_name":"Lanzhou University Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\u671f\u520a\u8bba\u6587"},{"id":"pmh:oai:doaj.org/article:745ffb85e32e40cdb50db073977a4178","is_oa":true,"landing_page_url":"https://doaj.org/article/745ffb85e32e40cdb50db073977a4178","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 9578-9586 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2963537","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2963537","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/08947996.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3453804540","display_name":"\u8c31\u56fe\u7406\u8bba\u53ca\u5176\u5728\u590d\u6742\u7f51\u7edc\u4e2d\u7684\u5e94\u7528\u7814\u7a76","funder_award_id":"11361033","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5181495541","display_name":null,"funder_award_id":"1212RJZA029","funder_id":"https://openalex.org/F4320322880","funder_display_name":"Natural Science Foundation of Gansu Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322880","display_name":"Natural Science Foundation of Gansu Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2998522041.pdf","grobid_xml":"https://content.openalex.org/works/W2998522041.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W828529927","https://openalex.org/W1503938960","https://openalex.org/W1971937094","https://openalex.org/W1973758399","https://openalex.org/W1975191997","https://openalex.org/W1986310535","https://openalex.org/W1996612368","https://openalex.org/W2007245700","https://openalex.org/W2011070383","https://openalex.org/W2017975254","https://openalex.org/W2021149413","https://openalex.org/W2025971310","https://openalex.org/W2028145367","https://openalex.org/W2029158589","https://openalex.org/W2038920443","https://openalex.org/W2045680616","https://openalex.org/W2047998870","https://openalex.org/W2074443723","https://openalex.org/W2087194317","https://openalex.org/W2088590769","https://openalex.org/W2089125183","https://openalex.org/W2105754035","https://openalex.org/W2107067224","https://openalex.org/W2119114096","https://openalex.org/W2124354935","https://openalex.org/W2130790725","https://openalex.org/W2132582966","https://openalex.org/W2140948740","https://openalex.org/W2142437744","https://openalex.org/W2151296292","https://openalex.org/W2154600255","https://openalex.org/W2162891889","https://openalex.org/W2326727950","https://openalex.org/W2393269069","https://openalex.org/W2517915074","https://openalex.org/W2613994501","https://openalex.org/W2790765877","https://openalex.org/W2792330169","https://openalex.org/W2895946680","https://openalex.org/W2908485946","https://openalex.org/W2953873015"],"related_works":["https://openalex.org/W1973509935","https://openalex.org/W4389076551","https://openalex.org/W2107855069","https://openalex.org/W2611574733","https://openalex.org/W2241641394","https://openalex.org/W2514739320","https://openalex.org/W2097992793","https://openalex.org/W2140653560","https://openalex.org/W2348831795","https://openalex.org/W4312461432"],"abstract_inverted_index":{"The":[0],"recognition":[1],"of":[2,13,23,40,77,87,94,109,139,180,190],"essential":[3,33,192],"proteins":[4,34,47],"not":[5,50],"only":[6],"can":[7,49,184],"help":[8,18,185],"to":[9,19,36,83,129,186],"understand":[10],"the":[11,21,37,74,85,92,107,154,165,178,188],"mechanism":[12,22],"cell":[14],"operation,":[15],"but":[16],"also":[17],"study":[20],"biological":[24],"evolution.":[25],"At":[26],"present,":[27],"many":[28],"scholars":[29],"have":[30],"been":[31],"discovering":[32],"according":[35],"topological":[38,81],"structure":[39],"protein":[41,78,110],"network":[42],"and":[43,65,68,80,99,119,124,144,164,169,182],"complexes.":[44,111],"While":[45],"some":[46],"still":[48],"be":[51],"recognized.":[52],"In":[53,127],"this":[54],"paper,":[55],"we":[56,90,113],"proposed":[57],"two":[58,132],"new":[59,116],"methods":[60,117,156,179],"complex":[61,66,95,100],"degree":[62],"centrality":[63,97,102],"(CDC)":[64],"in-degree":[67],"betweenness":[69],"definition":[70],"(CIBD)":[71],"which":[72,104],"integrate":[73],"local":[75],"character":[76],"complexes":[79],"properties":[82,108],"determine":[84],"essentiality":[86],"proteins.":[88,193],"First,":[89],"give":[91],"definitions":[93],"average":[96],"(CAC)":[98],"hybrid":[101],"(CHC)":[103],"both":[105],"describe":[106],"Then":[112],"propose":[114],"these":[115,131],"CDC":[118,181],"CIBD":[120,183],"based":[121],"on":[122],"CAC":[123],"CHC":[125],"definitions.":[126],"order":[128],"access":[130],"methods,":[133],"different":[134],"Protein-Protein":[135],"Interaction":[136],"(PPI)":[137],"networks":[138,175],"Saccharomyces":[140],"cerevisiae,":[141],"DIP,":[142],"MIPS":[143],"YMBD":[145],"are":[146],"used":[147],"as":[148],"experimental":[149,172],"materials.":[150],"By":[151],"comparing":[152],"with":[153],"competing":[155],"including":[157],"DC,":[158],"BC,":[159],"LAC,":[160],"SC,":[161],"EC,":[162],"SoECC":[163],"recent":[166],"method":[167],"LBCC":[168],"UC,":[170],"our":[171],"results":[173],"in":[174],"show":[176],"that":[177],"improve":[187],"precision":[189],"predicting":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
