{"id":"https://openalex.org/W2996228279","doi":"https://doi.org/10.1109/access.2019.2959401","title":"Identification of Yeast\u2019s Interactome Using Neural Networks","display_name":"Identification of Yeast\u2019s Interactome Using Neural Networks","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2996228279","doi":"https://doi.org/10.1109/access.2019.2959401","mag":"2996228279"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2959401","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2959401","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08932452.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08932452.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113422479","display_name":"Hafeez Ur Rehman","orcid":null},"institutions":[{"id":"https://openalex.org/I201384688","display_name":"National University of Computer and Emerging Sciences","ror":"https://ror.org/003eyb898","country_code":"PK","type":"education","lineage":["https://openalex.org/I201384688"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Hafeez Ur Rehman","raw_affiliation_strings":["Department of Computer Science, FAST National University of Computer and Emerging Sciences\u2014Peshawar, Peshawar, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, FAST National University of Computer and Emerging Sciences\u2014Peshawar, Peshawar, Pakistan","institution_ids":["https://openalex.org/I201384688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089172584","display_name":"Usman Habib","orcid":"https://orcid.org/0000-0003-4793-6239"},"institutions":[{"id":"https://openalex.org/I201384688","display_name":"National University of Computer and Emerging Sciences","ror":"https://ror.org/003eyb898","country_code":"PK","type":"education","lineage":["https://openalex.org/I201384688"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Usman Habib","raw_affiliation_strings":["Department of Computer Science, FAST National University of Computer and Emerging Sciences\u2014Peshawar, Peshawar, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, FAST National University of Computer and Emerging Sciences\u2014Peshawar, Peshawar, Pakistan","institution_ids":["https://openalex.org/I201384688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102953547","display_name":"Umer Ijaz","orcid":"https://orcid.org/0000-0002-5405-6750"},"institutions":[{"id":"https://openalex.org/I194348271","display_name":"Government College University, Faisalabad","ror":"https://ror.org/051zgra59","country_code":"PK","type":"education","lineage":["https://openalex.org/I194348271"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Umer Ijaz","raw_affiliation_strings":["Department of Electrical Engineering, Government College University, Faisalabad, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Government College University, Faisalabad, Pakistan","institution_ids":["https://openalex.org/I194348271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002879645","display_name":"Naveed Islam","orcid":"https://orcid.org/0000-0003-0648-8804"},"institutions":[{"id":"https://openalex.org/I206573129","display_name":"Islamia College University","ror":"https://ror.org/02p2c1595","country_code":"PK","type":"education","lineage":["https://openalex.org/I206573129"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Naveed Islam","raw_affiliation_strings":["Department of Computer Science, Islamia College University, Peshawar, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Islamia College University, Peshawar, Pakistan","institution_ids":["https://openalex.org/I206573129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077993621","display_name":"Atta ur Rehman Khan","orcid":"https://orcid.org/0000-0003-2930-6508"},"institutions":[{"id":"https://openalex.org/I45998257","display_name":"Sohar University","ror":"https://ror.org/02ftvf862","country_code":"OM","type":"education","lineage":["https://openalex.org/I45998257"]}],"countries":["OM"],"is_corresponding":false,"raw_author_name":"Atta Ur Rehman Khan","raw_affiliation_strings":["Faculty of Computing and Information Technology, Sohar University, Sohar, Oman"],"affiliations":[{"raw_affiliation_string":"Faculty of Computing and Information Technology, Sohar University, Sohar, Oman","institution_ids":["https://openalex.org/I45998257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087735486","display_name":"Raheel Nawaz","orcid":"https://orcid.org/0000-0001-9588-0052"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raheel Nawaz","raw_affiliation_strings":["Business School, Manchester Metropolitan University (MMU), Manchester, U.K"],"affiliations":[{"raw_affiliation_string":"Business School, Manchester Metropolitan University (MMU), Manchester, U.K","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5113422479"],"corresponding_institution_ids":["https://openalex.org/I201384688"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12674032,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"7","issue":null,"first_page":"179634","last_page":"179645"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.8933446407318115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6978999376296997},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.5581560134887695},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5106762051582336},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49731162190437317},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.46476539969444275},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.45939135551452637},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4496210813522339},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.445634126663208},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4258379340171814},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4230140745639801},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41570451855659485},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32805460691452026},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19474798440933228},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17880263924598694},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09636801481246948}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.8933446407318115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6978999376296997},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.5581560134887695},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5106762051582336},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49731162190437317},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.46476539969444275},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.45939135551452637},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4496210813522339},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.445634126663208},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4258379340171814},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4230140745639801},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41570451855659485},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32805460691452026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19474798440933228},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17880263924598694},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09636801481246948},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2019.2959401","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2959401","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08932452.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:e-space.mmu.ac.uk:624662","is_oa":true,"landing_page_url":"https://e-space.mmu.ac.uk/view/authors/f9d34b9854170ccd971e3a63ae6dc595.html>","pdf_url":"https://e-space.mmu.ac.uk/624662/8/08932452.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:5ee00f2660a246359edac6c3d0cd8405","is_oa":true,"landing_page_url":"https://doaj.org/article/5ee00f2660a246359edac6c3d0cd8405","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 179634-179645 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2959401","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2959401","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08932452.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2996228279.pdf","grobid_xml":"https://content.openalex.org/works/W2996228279.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1575542444","https://openalex.org/W1583876435","https://openalex.org/W1982267716","https://openalex.org/W1982481323","https://openalex.org/W2001457899","https://openalex.org/W2021703339","https://openalex.org/W2029574260","https://openalex.org/W2039473152","https://openalex.org/W2055043387","https://openalex.org/W2065304353","https://openalex.org/W2065933707","https://openalex.org/W2072287929","https://openalex.org/W2091506983","https://openalex.org/W2091710329","https://openalex.org/W2096173332","https://openalex.org/W2111577229","https://openalex.org/W2115451817","https://openalex.org/W2120386856","https://openalex.org/W2128276810","https://openalex.org/W2128796532","https://openalex.org/W2129129117","https://openalex.org/W2130479394","https://openalex.org/W2134026036","https://openalex.org/W2138551420","https://openalex.org/W2143720865","https://openalex.org/W2145427519","https://openalex.org/W2147736120","https://openalex.org/W2149148688","https://openalex.org/W2152991541","https://openalex.org/W2153577994","https://openalex.org/W2158564991","https://openalex.org/W2167869241","https://openalex.org/W2172049947","https://openalex.org/W2214314614","https://openalex.org/W2246049295","https://openalex.org/W2344454296","https://openalex.org/W2737723797","https://openalex.org/W2739999456","https://openalex.org/W2763145440","https://openalex.org/W2949170474","https://openalex.org/W2954659400","https://openalex.org/W4236236547","https://openalex.org/W4251702375","https://openalex.org/W6741409233"],"related_works":["https://openalex.org/W2018720220","https://openalex.org/W1500663296","https://openalex.org/W3159731292","https://openalex.org/W2392586760","https://openalex.org/W2152546257","https://openalex.org/W2360971668","https://openalex.org/W1982038138","https://openalex.org/W2157795344","https://openalex.org/W2124087471","https://openalex.org/W2162117109"],"abstract_inverted_index":{"An":[0],"important":[1],"aspect":[2],"for":[3,26,56,119,204,218],"designing":[4,64],"precise":[5],"medical":[6,60],"therapies":[7],"is":[8],"to":[9,38,102,193],"have":[10],"an":[11,32,214],"accurate":[12],"knowledge":[13],"of":[14,49,59,77,97,123,130,166,216],"protein":[15,16,224],"interactions":[17,122],"involved":[18],"in":[19,42,99,134,144],"the":[20,57,70,104,121,136,170,210,227],"process.":[21],"Next":[22],"generation":[23],"sequencing":[24],"technologies":[25],"discovering":[27],"novel":[28],"genes":[29],"are":[30,83,186],"fuelling":[31],"information":[33],"explosion":[34],"that":[35],"allows":[36],"researchers":[37],"study":[39],"these":[40,50],"molecules":[41],"previously":[43],"unimagined":[44],"ways.":[45],"A":[46],"profound":[47],"understanding":[48],"biological":[51,174],"components":[52],"promises":[53],"great":[54],"leaps":[55],"field":[58],"sciences,":[61],"i.e.,":[62],"by":[63,68],"personalized/preventive":[65],"medicines,":[66],"or":[67],"curing":[69],"life":[71],"threatening":[72],"diseases":[73],"including":[74],"many":[75],"types":[76],"cancers":[78],"etc.":[79],"However,":[80],"experimental":[81],"techniques":[82,101],"slow":[84],"and":[85,87,112,142,180],"noisy;":[86],"usually":[88],"report":[89],"false":[90],"interactions.":[91,106,196],"These":[92,184],"limitations":[93],"prompted":[94],"a":[95,114,145],"surge":[96],"interest":[98],"computational":[100],"infer":[103],"true":[105,195],"In":[107],"this":[108,131],"paper,":[109],"we":[110],"propose":[111],"evaluate":[113],"Neural":[115,189],"Network":[116,190],"based":[117,182,191],"approach":[118,132],"deciphering":[120],"Saccharomyces":[124,205],"cerevisiae":[125],"species":[126],"proteins.":[127],"The":[128,148,197],"novelty":[129],"lies":[133],"integrating":[135],"evidences":[137,150,172],"(broadly":[138],"classified":[139],"as":[140],"structural":[141],"non-structural)":[143],"hybrid":[146],"fashion.":[147],"structure-based":[149],"include,":[151,173],"geometrical":[152],"features":[153,185],"extracted":[154],"from":[155,209],"individual":[156],"homolog":[157],"templates,":[158],"e.g.,":[159],"interacting":[160],"residues,":[161,163],"interfacing":[162],"binding":[164],"sites":[165],"proteins":[167],"etc.,":[168],"while":[169,222],"non-structural":[171],"process,":[175],"molecular":[176],"function,":[177],"cellular":[178],"component":[179],"motif":[181],"similarities.":[183],"combined":[187],"using":[188],"classifier":[192],"predict":[194],"algorithm":[198],"showed":[199],"encouraging":[200],"results,":[201],"when":[202],"benchmarked":[203],"cerevisiae's":[206],"interactome,":[207],"retrieved":[208],"STRING":[211],"database;":[212],"with":[213],"accuracy":[215,228],"92%":[217],"functional":[219],"association":[220],"networks,":[221],"on":[223],"interaction":[225],"networks":[226],"remained":[229],"83%.":[230]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
