{"id":"https://openalex.org/W2989500256","doi":"https://doi.org/10.1109/access.2019.2952621","title":"iRBP-Motif-PSSM: Identification of RNA-Binding Proteins Based on Collaborative Learning","display_name":"iRBP-Motif-PSSM: Identification of RNA-Binding Proteins Based on Collaborative Learning","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2989500256","doi":"https://doi.org/10.1109/access.2019.2952621","mag":"2989500256"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2952621","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2952621","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2019.2952621","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xin Gao","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101977346","display_name":"Donghua Wang","orcid":"https://orcid.org/0000-0002-3450-8000"},"institutions":[{"id":"https://openalex.org/I4210135642","display_name":"Heilongjiang Academy of Land Reclamation Sciences","ror":"https://ror.org/03sv0ep05","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210135642"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donghua Wang","raw_affiliation_strings":["Department of General Surgery, Heilongjiang Province Land Reclamation Headquarters General Hospital, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Department of General Surgery, Heilongjiang Province Land Reclamation Headquarters General Hospital, Harbin, China","institution_ids":["https://openalex.org/I4210135642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433174","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-5683-777X"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069241620","display_name":"Qing Liao","orcid":"https://orcid.org/0000-0003-1012-5301"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Liao","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Shenzhen, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100395532","display_name":"Bin Liu","orcid":"https://orcid.org/0000-0002-8520-8374"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Liu","raw_affiliation_strings":["Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China","School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China","institution_ids":["https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100618900"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.4262,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.62531719,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"7","issue":null,"first_page":"168956","last_page":"168962"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.6740686893463135},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6380848288536072},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6036386489868164},{"id":"https://openalex.org/keywords/ribonucleoprotein","display_name":"Ribonucleoprotein","score":0.591863751411438},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5862075686454773},{"id":"https://openalex.org/keywords/rna-recognition-motif","display_name":"RNA recognition motif","score":0.5450790524482727},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4146946668624878},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3365488648414612},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3093891739845276},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2293393313884735}],"concepts":[{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.6740686893463135},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6380848288536072},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6036386489868164},{"id":"https://openalex.org/C75934600","wikidata":"https://www.wikidata.org/wiki/Q419245","display_name":"Ribonucleoprotein","level":4,"score":0.591863751411438},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5862075686454773},{"id":"https://openalex.org/C158730165","wikidata":"https://www.wikidata.org/wiki/Q24768845","display_name":"RNA recognition motif","level":5,"score":0.5450790524482727},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4146946668624878},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3365488648414612},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3093891739845276},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2293393313884735},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2019.2952621","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2952621","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:1b65006c555a49ab8e92f39a4a35ccfb","is_oa":true,"landing_page_url":"https://doaj.org/article/1b65006c555a49ab8e92f39a4a35ccfb","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 168956-168962 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2952621","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2952621","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.5600000023841858}],"awards":[{"id":"https://openalex.org/G4864480503","display_name":null,"funder_award_id":"61822306","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G75457812","display_name":null,"funder_award_id":"61672184","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1494484168","https://openalex.org/W1528632786","https://openalex.org/W1593880960","https://openalex.org/W1709815505","https://openalex.org/W1869662868","https://openalex.org/W1984574291","https://openalex.org/W1984794455","https://openalex.org/W1996768014","https://openalex.org/W1997535872","https://openalex.org/W2041185194","https://openalex.org/W2045747807","https://openalex.org/W2046792302","https://openalex.org/W2059926522","https://openalex.org/W2062296203","https://openalex.org/W2096387274","https://openalex.org/W2101234009","https://openalex.org/W2104813168","https://openalex.org/W2117502874","https://openalex.org/W2119331235","https://openalex.org/W2124402968","https://openalex.org/W2125800162","https://openalex.org/W2132581719","https://openalex.org/W2158714788","https://openalex.org/W2161920095","https://openalex.org/W2163449716","https://openalex.org/W2168514491","https://openalex.org/W2321308395","https://openalex.org/W2410565007","https://openalex.org/W2427122612","https://openalex.org/W2427753924","https://openalex.org/W2472502719","https://openalex.org/W2514430732","https://openalex.org/W2550969987","https://openalex.org/W2561871078","https://openalex.org/W2592644437","https://openalex.org/W2593867025","https://openalex.org/W2605763657","https://openalex.org/W2748005921","https://openalex.org/W2754289562","https://openalex.org/W2762448613","https://openalex.org/W2767841706","https://openalex.org/W2780936345","https://openalex.org/W2793168264","https://openalex.org/W2800333284","https://openalex.org/W2804489036","https://openalex.org/W2810225085","https://openalex.org/W2890951984","https://openalex.org/W2894436452","https://openalex.org/W2896636431","https://openalex.org/W2900694973","https://openalex.org/W2901754076","https://openalex.org/W2909409778","https://openalex.org/W2922210059","https://openalex.org/W2923490814","https://openalex.org/W2947612926","https://openalex.org/W2949453554","https://openalex.org/W2963579612","https://openalex.org/W2964792397","https://openalex.org/W2967960129","https://openalex.org/W2972223935","https://openalex.org/W2979937512","https://openalex.org/W2982608875","https://openalex.org/W2989977616","https://openalex.org/W4210623056","https://openalex.org/W6675354045","https://openalex.org/W6769459572"],"related_works":["https://openalex.org/W2005229765","https://openalex.org/W3164457769","https://openalex.org/W4318205411","https://openalex.org/W2141216907","https://openalex.org/W98050855","https://openalex.org/W2115603172","https://openalex.org/W1972790961","https://openalex.org/W2988385586","https://openalex.org/W1984123248","https://openalex.org/W2353363409"],"abstract_inverted_index":{"RNAs":[0],"and":[1,25,39,61],"RNA-binding":[2,33,54],"proteins":[3,34,55],"(RBPs)":[4],"in":[5,22],"cells":[6],"can":[7],"bind":[8],"with":[9],"each":[10],"other":[11,94],"to":[12,29,76],"form":[13],"a":[14,36,46,105],"nuclear":[15],"ribonucleoprotein":[16],"(RNP)":[17],"complex,":[18],"playing":[19],"important":[20],"roles":[21],"life":[23],"processes,":[24],"gene":[26],"regulation.":[27],"How":[28],"accurately":[30],"predict":[31],"the":[32,58,62,67,78,82],"is":[35,104],"big":[37],"challenge":[38],"hot":[40],"research":[41],"task.":[42],"Here,":[43],"we":[44],"proposed":[45],"new":[47],"computational":[48],"predictor":[49],"called":[50],"iRBP-Motif-PSSM":[51,89,103],"for":[52,97,108],"identifying":[53,98],"by":[56],"combining":[57],"motif":[59],"information":[60,64],"evolutionary":[63],"extracted":[65],"from":[66],"Position":[68],"Specific":[69],"Scoring":[70],"Matrixes.":[71],"Collaborative":[72],"Learning":[73],"was":[74],"employed":[75],"address":[77],"instability":[79],"problem":[80],"of":[81],"predictor.":[83],"The":[84],"experimental":[85],"results":[86],"showed":[87,90],"that":[88,102],"better":[91],"performance":[92],"than":[93],"existing":[95],"methods":[96],"NA-binding":[99],"proteins,":[100],"indicating":[101],"useful":[106],"tool":[107],"biological":[109],"analysis.":[110]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}