{"id":"https://openalex.org/W2981907454","doi":"https://doi.org/10.1109/access.2019.2949415","title":"Recognizing Novel Tumor Suppressor Genes Using a Network Machine Learning Strategy","display_name":"Recognizing Novel Tumor Suppressor Genes Using a Network Machine Learning Strategy","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2981907454","doi":"https://doi.org/10.1109/access.2019.2949415","mag":"2981907454"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2949415","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2949415","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08882219.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08882219.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100626030","display_name":"Ran Zhao","orcid":"https://orcid.org/0000-0002-1109-5434"},"institutions":[{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ran Zhao","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai, China","institution_ids":["https://openalex.org/I96733725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100755955","display_name":"Lei Chen","orcid":"https://orcid.org/0000-0003-3068-1583"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]},{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Chen","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai, China","Shanghai Key Laboratory of PMMP, East China Normal University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai, China","institution_ids":["https://openalex.org/I96733725"]},{"raw_affiliation_string":"Shanghai Key Laboratory of PMMP, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103242865","display_name":"Bo Zhou","orcid":"https://orcid.org/0000-0001-9507-2442"},"institutions":[{"id":"https://openalex.org/I4210135985","display_name":"Shanghai University of Medicine and Health Sciences","ror":"https://ror.org/03ns6aq57","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210135985"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Zhou","raw_affiliation_strings":["School of Basic Medicine, Shanghai University of Medicine and Health Sciences, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medicine, Shanghai University of Medicine and Health Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210135985"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044056988","display_name":"Zihan Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi-Han Guo","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai, China","institution_ids":["https://openalex.org/I96733725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068687838","display_name":"Shuaiqun Wang","orcid":"https://orcid.org/0000-0001-6274-4097"},"institutions":[{"id":"https://openalex.org/I96733725","display_name":"Shanghai Maritime University","ror":"https://ror.org/04z7qrj66","country_code":"CN","type":"education","lineage":["https://openalex.org/I96733725"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuaiqun Wang","raw_affiliation_strings":["College of Information Engineering, Shanghai Maritime University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Shanghai Maritime University, Shanghai, China","institution_ids":["https://openalex.org/I96733725"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048307995","display_name":"Aorigele","orcid":null},"institutions":[{"id":"https://openalex.org/I42766147","display_name":"University of Toyama","ror":"https://ror.org/0445phv87","country_code":"JP","type":"education","lineage":["https://openalex.org/I42766147"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Aorigele","raw_affiliation_strings":["Faculty of Engineering, University of Toyama, Toyama, Japan"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Toyama, Toyama, Japan","institution_ids":["https://openalex.org/I42766147"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100626030"],"corresponding_institution_ids":["https://openalex.org/I96733725"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.46,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.82506916,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":null,"first_page":"155002","last_page":"155013"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5699853897094727},{"id":"https://openalex.org/keywords/suppressor","display_name":"Suppressor","score":0.5364452600479126},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41386091709136963},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3598027229309082},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3394973576068878},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2888393998146057}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5699853897094727},{"id":"https://openalex.org/C179185449","wikidata":"https://www.wikidata.org/wiki/Q219699","display_name":"Suppressor","level":3,"score":0.5364452600479126},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41386091709136963},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3598027229309082},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3394973576068878},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2888393998146057}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2019.2949415","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2949415","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08882219.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:ec2578cd58e0442780fe07cc40e85bfa","is_oa":true,"landing_page_url":"https://doaj.org/article/ec2578cd58e0442780fe07cc40e85bfa","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 155002-155013 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2949415","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2949415","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08882219.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G1417234759","display_name":null,"funder_award_id":"18dz2271000","funder_id":"https://openalex.org/F4320309612","funder_display_name":"Natural Science Foundation of Shanghai"},{"id":"https://openalex.org/G2270449037","display_name":null,"funder_award_id":"17ZR1412500","funder_id":"https://openalex.org/F4320309612","funder_display_name":"Natural Science Foundation of Shanghai"},{"id":"https://openalex.org/G4576114574","display_name":null,"funder_award_id":"17ZR1412500","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"}],"funders":[{"id":"https://openalex.org/F4320309612","display_name":"Natural Science Foundation of Shanghai","ror":null},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2981907454.pdf","grobid_xml":"https://content.openalex.org/works/W2981907454.grobid-xml"},"referenced_works_count":119,"referenced_works":["https://openalex.org/W46659105","https://openalex.org/W119234088","https://openalex.org/W1502467303","https://openalex.org/W1536642770","https://openalex.org/W1680392829","https://openalex.org/W1778319203","https://openalex.org/W1843651808","https://openalex.org/W1893561328","https://openalex.org/W1911726069","https://openalex.org/W1919452523","https://openalex.org/W1983502906","https://openalex.org/W1983672040","https://openalex.org/W1989108484","https://openalex.org/W1992746048","https://openalex.org/W1994162941","https://openalex.org/W1995741673","https://openalex.org/W1998142094","https://openalex.org/W1998329483","https://openalex.org/W2004065324","https://openalex.org/W2006565856","https://openalex.org/W2006937300","https://openalex.org/W2007173493","https://openalex.org/W2014952486","https://openalex.org/W2019695153","https://openalex.org/W2027830190","https://openalex.org/W2031829676","https://openalex.org/W2034820020","https://openalex.org/W2040853801","https://openalex.org/W2044523575","https://openalex.org/W2050857920","https://openalex.org/W2055110202","https://openalex.org/W2057220984","https://openalex.org/W2066813174","https://openalex.org/W2067164920","https://openalex.org/W2078069292","https://openalex.org/W2082609381","https://openalex.org/W2083122374","https://openalex.org/W2096173332","https://openalex.org/W2096695201","https://openalex.org/W2101170994","https://openalex.org/W2101733930","https://openalex.org/W2104056992","https://openalex.org/W2108754936","https://openalex.org/W2109553965","https://openalex.org/W2110054974","https://openalex.org/W2110537036","https://openalex.org/W2115899293","https://openalex.org/W2119220491","https://openalex.org/W2123500593","https://openalex.org/W2129326357","https://openalex.org/W2136355252","https://openalex.org/W2145161668","https://openalex.org/W2151576670","https://openalex.org/W2152966647","https://openalex.org/W2156221266","https://openalex.org/W2157761330","https://openalex.org/W2162557849","https://openalex.org/W2166376600","https://openalex.org/W2168735334","https://openalex.org/W2177605184","https://openalex.org/W2214018254","https://openalex.org/W2242837559","https://openalex.org/W2262414037","https://openalex.org/W2317971350","https://openalex.org/W2324080174","https://openalex.org/W2332931934","https://openalex.org/W2338345253","https://openalex.org/W2393571430","https://openalex.org/W2496824200","https://openalex.org/W2513743670","https://openalex.org/W2524537335","https://openalex.org/W2549827258","https://openalex.org/W2556519015","https://openalex.org/W2569439418","https://openalex.org/W2581439210","https://openalex.org/W2583310064","https://openalex.org/W2605543724","https://openalex.org/W2608969085","https://openalex.org/W2623694592","https://openalex.org/W2732908489","https://openalex.org/W2753953057","https://openalex.org/W2762418270","https://openalex.org/W2768441550","https://openalex.org/W2772308895","https://openalex.org/W2776531206","https://openalex.org/W2793168264","https://openalex.org/W2797032521","https://openalex.org/W2800333284","https://openalex.org/W2801260524","https://openalex.org/W2804672364","https://openalex.org/W2807465141","https://openalex.org/W2809238127","https://openalex.org/W2883038666","https://openalex.org/W2887157347","https://openalex.org/W2888710868","https://openalex.org/W2895757710","https://openalex.org/W2900223779","https://openalex.org/W2904107098","https://openalex.org/W2905949588","https://openalex.org/W2911964244","https://openalex.org/W2916888356","https://openalex.org/W2942493487","https://openalex.org/W2948948096","https://openalex.org/W2967960129","https://openalex.org/W2975265487","https://openalex.org/W2979645924","https://openalex.org/W2998768810","https://openalex.org/W3025617012","https://openalex.org/W4243634926","https://openalex.org/W4253033167","https://openalex.org/W6602002561","https://openalex.org/W6604303387","https://openalex.org/W6637386731","https://openalex.org/W6639576792","https://openalex.org/W6640175909","https://openalex.org/W6664833553","https://openalex.org/W6703415517","https://openalex.org/W6755536617","https://openalex.org/W6777164280"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189"],"abstract_inverted_index":{"Extensive":[0],"research":[1],"on":[2],"tumor":[3],"suppressor":[4],"genes":[5,111,152,210],"(TSGs)":[6],"is":[7,26,33],"helpful":[8],"to":[9,23,37,48,56,69,88,141,172,194,214,230],"understand":[10],"the":[11,97,101,157,173,177,183,206],"pathogenesis":[12],"of":[13,27,73,189],"cancer":[14],"and":[15,30,139,233],"design":[16,38],"effective":[17,39],"treatments.":[18],"However,":[19,60],"using":[20],"traditional":[21],"experiments":[22],"identify":[24,89],"TSGs":[25,99,107,147,175,196,216,225,232,237],"high":[28,239],"costs":[29],"time-consuming.":[31],"It":[32],"an":[34],"alternative":[35],"way":[36],"computational":[40,51,84],"methods":[41,52,62,170],"for":[42],"screening":[43],"out":[44],"latent":[45,90,143],"TSGs.":[46,59,91,144],"Up":[47],"now,":[49],"some":[50,168,188],"have":[53,153],"been":[54,154],"proposed":[55,87],"predict":[57,142],"new":[58],"these":[61],"did":[63],"not":[64],"contain":[65],"a":[66,82,126],"learning":[67],"procedure":[68],"extract":[70],"essential":[71],"properties":[72],"validated":[74,98,174,215,231],"TSGs,":[75,187],"reducing":[76],"their":[77],"efficiencies.":[78],"In":[79],"this":[80,93],"study,":[81],"novel":[83,236],"method":[85,163,203],"was":[86],"To":[92],"end,":[94],"we":[95,221],"downloaded":[96],"from":[100,119],"TSGene":[102,158,178],"database":[103,159,179],"(Version":[104,160,180],"1.0).":[105],"These":[106],"together":[108],"with":[109,197,211,238],"other":[110],"were":[112,117,137,148],"represented":[113],"by":[114],"features":[115],"that":[116,208,226],"extracted":[118],"protein-protein":[120],"interaction":[121],"networks":[122],"in":[123,156,176],"STRING":[124],"via":[125],"powerful":[127],"network":[128],"embedding":[129],"method,":[130],"Mashup.":[131],"Then,":[132],"thirty":[133],"random":[134],"forest":[135],"models":[136],"constructed":[138],"used":[140],"135":[145],"inferred":[146,186,224],"obtained,":[149],"where":[150],"28":[151],"included":[155],"2.0).":[161,181],"Our":[162],"had":[164,227],"better":[165],"performance":[166],"than":[167],"previous":[169],"according":[171],"For":[182],"rest":[184],"107":[185],"them":[190],"can":[191,204,217,234],"be":[192,195,218,235],"confirmed":[193],"solid":[198],"literature":[199],"support.":[200],"Finally,":[201],"our":[202],"overcome":[205],"defects":[207],"only":[209],"strong":[212],"associations":[213,229],"identified":[219],"because":[220],"obtained":[222],"several":[223],"weak":[228],"probabilities.":[240]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
