{"id":"https://openalex.org/W2973097270","doi":"https://doi.org/10.1109/access.2019.2940470","title":"CGMDA: An Approach to Predict and Validate MicroRNA-Disease Associations by Utilizing Chaos Game Representation and LightGBM","display_name":"CGMDA: An Approach to Predict and Validate MicroRNA-Disease Associations by Utilizing Chaos Game Representation and LightGBM","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2973097270","doi":"https://doi.org/10.1109/access.2019.2940470","mag":"2973097270"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2940470","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2940470","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08833490.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08833490.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032517198","display_name":"Kai Zheng","orcid":"https://orcid.org/0000-0003-1578-1818"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Zheng","raw_affiliation_strings":["Mine Digitization Engineering Research Center of Ministry of Education of the People\u2019s Republic of China, Xuzhou, China","School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","Mine Digitization Engineering Research Center of Ministry of Education of the People's Republic of China, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-1578-1818","affiliations":[{"raw_affiliation_string":"Mine Digitization Engineering Research Center of Ministry of Education of the People\u2019s Republic of China, Xuzhou, China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"Mine Digitization Engineering Research Center of Ministry of Education of the People's Republic of China, Xuzhou, China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436059","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-0184-307X"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["College of Information Science and Engineering, Zaozhuang University, Zaozhuang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Zaozhuang University, Zaozhuang, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, \u00dcr\u00fcmqi, China"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, \u00dcr\u00fcmqi, China","institution_ids":["https://openalex.org/I4210106108"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":2.4386,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.89442474,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"7","issue":null,"first_page":"133314","last_page":"133323"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6607621908187866},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5858013033866882},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5322437286376953},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48307564854621887},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.45437735319137573},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4529229700565338},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42166486382484436},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41373735666275024},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34771209955215454},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16541394591331482},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13856250047683716},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10215142369270325},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08265963196754456}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6607621908187866},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5858013033866882},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5322437286376953},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48307564854621887},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.45437735319137573},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4529229700565338},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42166486382484436},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41373735666275024},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34771209955215454},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16541394591331482},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13856250047683716},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10215142369270325},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08265963196754456},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2019.2940470","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2940470","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08833490.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:df9558e9b57d495ab426791cb1ca8d66","is_oa":true,"landing_page_url":"https://doaj.org/article/df9558e9b57d495ab426791cb1ca8d66","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 133314-133323 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2940470","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2940470","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08833490.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2973097270.pdf","grobid_xml":"https://content.openalex.org/works/W2973097270.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1514907448","https://openalex.org/W1678356000","https://openalex.org/W1920303762","https://openalex.org/W2014946489","https://openalex.org/W2026528132","https://openalex.org/W2029232508","https://openalex.org/W2047967134","https://openalex.org/W2057925000","https://openalex.org/W2070571588","https://openalex.org/W2070777085","https://openalex.org/W2084168100","https://openalex.org/W2091415346","https://openalex.org/W2099435530","https://openalex.org/W2106029302","https://openalex.org/W2110234420","https://openalex.org/W2118814218","https://openalex.org/W2128049108","https://openalex.org/W2128768066","https://openalex.org/W2129103781","https://openalex.org/W2129158737","https://openalex.org/W2138664009","https://openalex.org/W2141222510","https://openalex.org/W2145361279","https://openalex.org/W2146292498","https://openalex.org/W2157825442","https://openalex.org/W2158135353","https://openalex.org/W2158871051","https://openalex.org/W2159032347","https://openalex.org/W2166468869","https://openalex.org/W2295598076","https://openalex.org/W2354009991","https://openalex.org/W2410390867","https://openalex.org/W2584926544","https://openalex.org/W2592189645","https://openalex.org/W2738076571","https://openalex.org/W2768348081","https://openalex.org/W2789121006","https://openalex.org/W2799341160","https://openalex.org/W2923922207","https://openalex.org/W2950354111","https://openalex.org/W3147429590","https://openalex.org/W4256413664","https://openalex.org/W6630611256","https://openalex.org/W6745609711","https://openalex.org/W6761883000"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2961085424","https://openalex.org/W2795079307","https://openalex.org/W2793058541","https://openalex.org/W3118638206","https://openalex.org/W4224009465","https://openalex.org/W2112284452","https://openalex.org/W1983629434","https://openalex.org/W4324271173","https://openalex.org/W1967645776"],"abstract_inverted_index":{"Recent":[0],"studies":[1],"have":[2],"shown":[3],"that":[4,180,208],"microRNAs":[5],"(miRNAs)":[6],"play":[7],"an":[8],"important":[9],"role":[10],"in":[11,201,219],"complex":[12,175],"human":[13,174],"diseases.":[14,176],"Identifying":[15],"potential":[16,216],"miRNA-disease":[17,36,68],"associations":[18],"is":[19,170,210],"useful":[20],"for":[21,66,109],"understanding":[22],"the":[23,110,126,133,136,145,153,182],"pathogenesis.":[24],"However,":[25],"there":[26],"are":[27],"currently":[28],"only":[29,46],"a":[30,63,131,211],"few":[31],"methods":[32,44],"proposed":[33],"to":[34,77,96,113,160,172],"predict":[35],"association":[37,69,83],"based":[38,70],"on":[39,71,144],"sequence":[40,49,54,87,116],"information.":[41],"And":[42],"these":[43,79],"can":[45],"quantify":[47],"nonlinear":[48],"relationships":[50],"without":[51],"taking":[52],"linear":[53],"information":[55,84,91,95,117,120],"into":[56,118],"account.":[57],"In":[58,100,125,167],"this":[59],"work,":[60],"we":[61,102,157],"designed":[62],"computational":[64],"method":[65],"predicting":[67],"chaos":[72,104],"game":[73,105],"representation,":[74],"called":[75],"CGMDA,":[76,156],"overcome":[78],"problems.":[80],"CGMDA":[81,129,169,209],"combines":[82],"with":[85],"miRNA":[86,89,115],"information,":[88],"functional":[90],"and":[92,121,163,193,214,223],"disease":[93],"semantic":[94],"improve":[97],"prediction":[98,165],"accuracy.":[99],"particular,":[101],"use":[103],"representation":[106],"(CGR)":[107],"technology":[108],"first":[111],"time":[112],"transform":[114],"image":[119],"extract":[122],"its":[123],"features.":[124],"cross-validation":[127],"experiment,":[128],"achieved":[130],"mean":[132],"area":[134],"under":[135],"receiver":[137],"operating":[138],"characteristic":[139],"curve":[140],"(AUC)":[141],"of":[142,155,181,225],"0.9099":[143],"HMDD":[146],"v3.0":[147],"data":[148],"set.":[149],"To":[150],"better":[151],"evaluate":[152],"performance":[154],"compared":[158],"it":[159],"different":[161],"classifiers":[162],"related":[164],"methods.":[166],"addition,":[168],"applied":[171],"three":[173],"The":[177],"results":[178,206],"showed":[179],"top":[183],"40":[184],"disease-related":[185],"miRNAs":[186],"predicted,":[187],"39":[188,191],"(Breast":[189],"Neoplasm),":[190],"(Lymphoma)":[192],"38":[194],"(Colon":[195],"Neoplasm)":[196],"were":[197],"validated":[198],"by":[199],"experiments":[200],"case":[202],"studies.":[203],"These":[204],"experimental":[205],"show":[207],"reliable":[212],"tool":[213],"has":[215],"application":[217],"prospects":[218],"assisting":[220],"early":[221],"diagnosis":[222],"treatment":[224],"prognosis.":[226]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
