{"id":"https://openalex.org/W2963852584","doi":"https://doi.org/10.1109/access.2019.2929588","title":"Identification of Long Non-Coding RNA Signatures for Specific Disease-Free Prognosis in Clear Cell Renal Carcinoma","display_name":"Identification of Long Non-Coding RNA Signatures for Specific Disease-Free Prognosis in Clear Cell Renal Carcinoma","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2963852584","doi":"https://doi.org/10.1109/access.2019.2929588","mag":"2963852584"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2929588","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2929588","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08765720.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08765720.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081130204","display_name":"Wujiao Wang","orcid":"https://orcid.org/0000-0003-2967-7018"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wujiao Wang","raw_affiliation_strings":["First College of Medicine, Chongqing Medical University, Chongqing, China"],"raw_orcid":"https://orcid.org/0000-0003-2967-7018","affiliations":[{"raw_affiliation_string":"First College of Medicine, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002890531","display_name":"Jing Song","orcid":"https://orcid.org/0000-0003-1475-5263"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Song","raw_affiliation_strings":["Department of Bioinformatics, Chongqing Medical University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101560598","display_name":"Wanfeng Zhang","orcid":"https://orcid.org/0000-0002-8717-1552"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanfeng Zhang","raw_affiliation_strings":["Department of Bioinformatics, Chongqing Medical University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033095261","display_name":"Yongyao Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongyao Tang","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Chongqing Medical University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061423184","display_name":"Ruihan Luo","orcid":"https://orcid.org/0000-0001-5997-4051"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruihan Luo","raw_affiliation_strings":["Department of Bioinformatics, Chongqing Medical University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008334574","display_name":"Longke Ran","orcid":"https://orcid.org/0000-0002-6434-5521"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longke Ran","raw_affiliation_strings":["Department of Bioinformatics, Chongqing Medical University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004676038","display_name":"Fangzhou Song","orcid":"https://orcid.org/0000-0002-4083-3889"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangzhou Song","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Chongqing Medical University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I87780372"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.1727,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.57261212,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"7","issue":null,"first_page":"99290","last_page":"99298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10449","display_name":"Renal cell carcinoma treatment","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10449","display_name":"Renal cell carcinoma treatment","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/clear-cell-renal-cell-carcinoma","display_name":"Clear cell renal cell carcinoma","score":0.8013948202133179},{"id":"https://openalex.org/keywords/proportional-hazards-model","display_name":"Proportional hazards model","score":0.5191071033477783},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.49091869592666626},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.4857107102870941},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.4433676600456238},{"id":"https://openalex.org/keywords/kidney-cancer","display_name":"Kidney cancer","score":0.43685290217399597},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4347050189971924},{"id":"https://openalex.org/keywords/renal-cell-carcinoma","display_name":"Renal cell carcinoma","score":0.41855230927467346},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.40415534377098083},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3465750217437744},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34590578079223633},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.305785596370697},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09860268235206604}],"concepts":[{"id":"https://openalex.org/C2781278892","wikidata":"https://www.wikidata.org/wiki/Q18556340","display_name":"Clear cell renal cell carcinoma","level":3,"score":0.8013948202133179},{"id":"https://openalex.org/C50382708","wikidata":"https://www.wikidata.org/wiki/Q223218","display_name":"Proportional hazards model","level":2,"score":0.5191071033477783},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.49091869592666626},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.4857107102870941},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.4433676600456238},{"id":"https://openalex.org/C2781068499","wikidata":"https://www.wikidata.org/wiki/Q3242950","display_name":"Kidney cancer","level":3,"score":0.43685290217399597},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4347050189971924},{"id":"https://openalex.org/C2777472916","wikidata":"https://www.wikidata.org/wiki/Q1164529","display_name":"Renal cell carcinoma","level":2,"score":0.41855230927467346},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.40415534377098083},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3465750217437744},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34590578079223633},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.305785596370697},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09860268235206604}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2019.2929588","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2929588","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08765720.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:b17ea3d750fb48c1a69e8c115aef4c0c","is_oa":true,"landing_page_url":"https://doaj.org/article/b17ea3d750fb48c1a69e8c115aef4c0c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 99290-99298 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2929588","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2929588","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08765720.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G6675823287","display_name":null,"funder_award_id":"cstc2018jcyjAX0019","funder_id":"https://openalex.org/F4320323172","funder_display_name":"Natural Science Foundation of Chongqing"}],"funders":[{"id":"https://openalex.org/F4320323172","display_name":"Natural Science Foundation of Chongqing","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2963852584.pdf","grobid_xml":"https://content.openalex.org/works/W2963852584.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1570622790","https://openalex.org/W1966669109","https://openalex.org/W2045107415","https://openalex.org/W2116634113","https://openalex.org/W2146512944","https://openalex.org/W2149559777","https://openalex.org/W2156558356","https://openalex.org/W2179438025","https://openalex.org/W2261187761","https://openalex.org/W2342038157","https://openalex.org/W2461489883","https://openalex.org/W2566129761","https://openalex.org/W2612084614","https://openalex.org/W2614480329","https://openalex.org/W2618725731","https://openalex.org/W2750877157","https://openalex.org/W2756219586","https://openalex.org/W2756866387","https://openalex.org/W2781525129","https://openalex.org/W2785042508","https://openalex.org/W2884170377","https://openalex.org/W2889646458"],"related_works":["https://openalex.org/W4406213636","https://openalex.org/W4302307493","https://openalex.org/W4393442734","https://openalex.org/W2111158384","https://openalex.org/W4390485116","https://openalex.org/W2784276319","https://openalex.org/W2891618990","https://openalex.org/W2415052233","https://openalex.org/W4212773757","https://openalex.org/W2126021534"],"abstract_inverted_index":{"Patients":[0],"with":[1,14,47,151,178,190,206,221,244],"clear":[2],"cell":[3],"renal":[4],"carcinoma":[5],"(ccRCC)":[6],"often":[7],"relapse":[8],"after":[9],"nephrectomy,":[10],"even":[11],"for":[12,25,42,104,147,188,239],"those":[13],"localized":[15,152],"or":[16],"locally":[17,27,179],"advanced":[18,180],"diseases.":[19],"However,":[20],"ideal":[21],"prognostic":[22,80,145],"biomarkers":[23,41],"specifically":[24],"localized,":[26],"advanced,":[28],"and":[29,51,63,90,129,139,165,209,227],"metastatic":[30,191],"ccRCC":[31,153],"are":[32],"inadequate.":[33],"In":[34],"this":[35],"paper,":[36],"we":[37],"systematically":[38],"identified":[39,235],"potential":[40,169],"disease-free":[43,172],"prognosis":[44,173,241],"of":[45,54,85,115,149,176,242],"patients":[46,150,177,189,243],"ccRCC.":[48],"The":[49,55,82],"expression":[50,83],"clinical":[52,250],"data":[53,84],"Cancer":[56],"Genome":[57],"Atlas":[58],"(TCGA,":[59],"n":[60,69],"=":[61,70,88,93,156],"603)":[62],"international":[64],"cancer":[65],"genomics":[66],"consortium":[67],"(ICGC,":[68],"392)":[71],"were":[72,100,119],"leveraged":[73],"to":[74,102],"identify":[75],"long":[76],"non-coding":[77],"RNA":[78,210],"(lncRNA)-based":[79],"markers.":[81],"GSE53757":[86],"(n":[87,92],"144)":[89],"GSE66270":[91],"28)":[94],"from":[95],"Gene":[96],"Expression":[97],"Omnibus":[98],"(GEO)":[99],"used":[101],"screen":[103],"ccRCC-related":[105],"differentially":[106],"expressed":[107],"(DE)":[108],"genes.":[109],"893":[110],"DE":[111],"lncRNAs":[112],"in":[113,170],"common":[114],"the":[116,135,171,201],"three":[117],"datasets":[118],"screened":[120],"out":[121],"[Benjamini-Hochberg":[122],"(BH)":[123],"adjusted":[124],"P":[125,155,182,194,213,231],"<;":[126,183,195,214,232],"0.05].":[127],"Univariate":[128],"multivariate":[130],"Cox":[131],"analysis":[132,198],"revealed":[133],"that":[134,200],"2-lncRNA":[136,202],"signature":[137,160,203,218],"(LINC00176":[138],"CTD-2145C24.5)":[140],"could":[141],"be":[142,248],"an":[143],"independent":[144],"marker":[146],"DFS":[148,240],"(log-rank":[154,181,193],"0.006).":[157],"Another":[158],"5-lncRNA":[159,217],"(DSCR9,":[161],"RP11-271C24.2,":[162],"RP11-424M24.5,":[163],"CTD-2171N6.1,":[164],"CTC-499B15.8)":[166],"have":[167],"great":[168],"not":[174],"only":[175],"0.001)":[184],"disease":[185,192],"but":[186],"also":[187],"0.001).":[196],"Functional":[197],"shown":[199],"was":[204,219],"associated":[205,220],"protein":[207],"deacetylation":[208],"splicing":[211],"(BH-adjusted":[212,230],"0.05),":[215],"while":[216],"deoxyribonuclease":[222],"activity,":[223,226],"RNA-dependent":[224],"ATPase":[225],"helicase":[228],"activity":[229],"0.05).":[233],"We":[234],"two":[236],"lncRNA":[237],"signatures":[238],"ccRCC,":[245],"which":[246],"may":[247],"valuable":[249],"tools":[251],"at":[252],"molecular-level.":[253]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
