{"id":"https://openalex.org/W2948909602","doi":"https://doi.org/10.1109/access.2019.2920708","title":"A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining","display_name":"A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2948909602","doi":"https://doi.org/10.1109/access.2019.2920708","mag":"2948909602"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2920708","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2920708","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08730332.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08730332.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100334099","display_name":"Donghyeon Kim","orcid":"https://orcid.org/0000-0002-8224-8354"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Donghyeon Kim","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, South Korea"],"raw_orcid":"https://orcid.org/0000-0002-8224-8354","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002413587","display_name":"Jinhyuk Lee","orcid":"https://orcid.org/0000-0003-4972-239X"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinhyuk Lee","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030764601","display_name":"Chan Ho So","orcid":"https://orcid.org/0000-0001-7633-1074"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chan Ho So","raw_affiliation_strings":["Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110703095","display_name":"Hwisang Jeon","orcid":null},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hwisang Jeon","raw_affiliation_strings":["Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007444423","display_name":"Minbyul Jeong","orcid":"https://orcid.org/0000-0002-1346-730X"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Minbyul Jeong","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101960399","display_name":"Yong-Hwa Choi","orcid":"https://orcid.org/0000-0002-5675-9417"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yonghwa Choi","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012809586","display_name":"Wonjin Yoon","orcid":"https://orcid.org/0000-0002-6435-548X"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Wonjin Yoon","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020746366","display_name":"Mujeen Sung","orcid":"https://orcid.org/0000-0002-7978-8114"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Mujeen Sung","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917278","display_name":"Jaewoo Kang","orcid":"https://orcid.org/0000-0001-6798-9106"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaewoo Kang","raw_affiliation_strings":["Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul, South Korea","institution_ids":["https://openalex.org/I197347611"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I197347611"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":7.1258,"has_fulltext":true,"cited_by_count":132,"citation_normalized_percentile":{"value":0.9798897,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"7","issue":null,"first_page":"73729","last_page":"73740"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8257186412811279},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.8082817792892456},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6275551915168762},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5910738110542297},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5831403136253357},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5609442591667175},{"id":"https://openalex.org/keywords/named-entity","display_name":"Named entity","score":0.5518277287483215},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5199341177940369},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4832240045070648},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4791126251220703},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.4168548583984375},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.41148149967193604}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8257186412811279},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.8082817792892456},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6275551915168762},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5910738110542297},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5831403136253357},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5609442591667175},{"id":"https://openalex.org/C2777889803","wikidata":"https://www.wikidata.org/wiki/Q25047676","display_name":"Named entity","level":2,"score":0.5518277287483215},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5199341177940369},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4832240045070648},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4791126251220703},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.4168548583984375},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.41148149967193604},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2019.2920708","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2920708","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08730332.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:b1e4f3c4937c423c8d952369aed597ac","is_oa":true,"landing_page_url":"https://doaj.org/article/b1e4f3c4937c423c8d952369aed597ac","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 73729-73740 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2920708","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2920708","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08730332.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.5,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G1284651169","display_name":null,"funder_award_id":"C1202-18-1001","funder_id":"https://openalex.org/F4320322065","funder_display_name":"National IT Industry Promotion Agency"},{"id":"https://openalex.org/G1476348561","display_name":null,"funder_award_id":"2017R1A2A1A17069645","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G3137975895","display_name":null,"funder_award_id":"2016M3A9A7916996","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G6186879168","display_name":null,"funder_award_id":"NRF-2017R1A2A1A17069645","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8100908729","display_name":null,"funder_award_id":"NRF-2016M3A9A7916996","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322065","display_name":"National IT Industry Promotion Agency","ror":"https://ror.org/026v53e29"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2948909602.pdf","grobid_xml":"https://content.openalex.org/works/W2948909602.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W1573258796","https://openalex.org/W1610821757","https://openalex.org/W1964670939","https://openalex.org/W1986657538","https://openalex.org/W2005058680","https://openalex.org/W2008830554","https://openalex.org/W2018518196","https://openalex.org/W2022484638","https://openalex.org/W2027979924","https://openalex.org/W2033377040","https://openalex.org/W2061167720","https://openalex.org/W2064675550","https://openalex.org/W2074640468","https://openalex.org/W2100627415","https://openalex.org/W2102514878","https://openalex.org/W2107580398","https://openalex.org/W2119412782","https://openalex.org/W2122732537","https://openalex.org/W2129113459","https://openalex.org/W2131285447","https://openalex.org/W2131774270","https://openalex.org/W2142016317","https://openalex.org/W2147880316","https://openalex.org/W2149369282","https://openalex.org/W2161905890","https://openalex.org/W2169099542","https://openalex.org/W2169491861","https://openalex.org/W2171374484","https://openalex.org/W2174602966","https://openalex.org/W2252174377","https://openalex.org/W2252278859","https://openalex.org/W2284907005","https://openalex.org/W2404369708","https://openalex.org/W2414378847","https://openalex.org/W2523586319","https://openalex.org/W2525778437","https://openalex.org/W2527896214","https://openalex.org/W2533611849","https://openalex.org/W2604019706","https://openalex.org/W2734608416","https://openalex.org/W2752636837","https://openalex.org/W2766208765","https://openalex.org/W2769387903","https://openalex.org/W2782437235","https://openalex.org/W2800535933","https://openalex.org/W2803609931","https://openalex.org/W2803614960","https://openalex.org/W2804425727","https://openalex.org/W2807873602","https://openalex.org/W2885197251","https://openalex.org/W2887593177","https://openalex.org/W2889869899","https://openalex.org/W2892252202","https://openalex.org/W2896457183","https://openalex.org/W2906722631","https://openalex.org/W2911489562","https://openalex.org/W2913428185","https://openalex.org/W2949176808","https://openalex.org/W2951559648","https://openalex.org/W2963339489","https://openalex.org/W2963341956","https://openalex.org/W2963568202","https://openalex.org/W2963625095","https://openalex.org/W2963709490","https://openalex.org/W2977393556","https://openalex.org/W3105491236","https://openalex.org/W4294170691","https://openalex.org/W4385245566","https://openalex.org/W6603694148","https://openalex.org/W6640598943","https://openalex.org/W6682082992","https://openalex.org/W6682691769","https://openalex.org/W6691644754","https://openalex.org/W6713634263","https://openalex.org/W6727406835","https://openalex.org/W6728098186","https://openalex.org/W6739901393","https://openalex.org/W6753731814","https://openalex.org/W6753894142","https://openalex.org/W6754230454","https://openalex.org/W6754582155","https://openalex.org/W6754948501","https://openalex.org/W6755207826","https://openalex.org/W6758293299","https://openalex.org/W6759831810","https://openalex.org/W6786476959"],"related_works":["https://openalex.org/W2032007337","https://openalex.org/W2186562580","https://openalex.org/W4379379356","https://openalex.org/W2134429551","https://openalex.org/W4378419072","https://openalex.org/W4221142212","https://openalex.org/W2287210469","https://openalex.org/W2901060953","https://openalex.org/W2899463504","https://openalex.org/W2295807127"],"abstract_inverted_index":{"The":[0,87,136,176],"amount":[1],"of":[2,114,182],"biomedical":[3,77],"literature":[4],"is":[5],"vast":[6],"and":[7,10,40,46,81,100,173,180],"growing":[8],"quickly,":[9],"accurate":[11],"text":[12,34,55,160],"mining":[13,35,56,161],"techniques":[14],"could":[15],"help":[16],"researchers":[17],"to":[18,110,132],"efficiently":[19],"extract":[20],"useful":[21],"information":[22,169],"from":[23],"the":[24,53,112,154],"literature.":[25],"However,":[26],"existing":[27],"named":[28,69,78,92,119,166],"entity":[29,70,79,93,120,167],"recognition":[30,71,80,94],"models":[31,95,122],"used":[32],"by":[33],"tools":[36,57],"such":[37,163],"as":[38,164],"tmTool":[39],"ezTag":[41],"are":[42,64,108,123,184],"not":[43,59],"effective":[44],"enough,":[45],"cannot":[47],"accurately":[48],"discover":[49,101],"new":[50,102,165],"entities.":[51,103,116],"Also,":[52,104],"traditional":[54],"do":[58],"consider":[60],"overlapping":[61,115],"entities,":[62],"which":[63,96],"frequently":[65],"observed":[66],"in":[67,145],"multi-type":[68,82],"results.":[72],"We":[73],"propose":[74],"a":[75,129,139],"neural":[76],"normalization":[83,121],"tool":[84],"called":[85],"BERN.":[86],"BERN":[88,126,137,155,183],"uses":[89],"high-performance":[90],"BioBERT":[91],"recognize":[97],"known":[98],"entities":[99,144],"probability-based":[105],"decision":[106],"rules":[107],"developed":[109],"identify":[111],"types":[113],"Furthermore,":[117],"various":[118],"integrated":[124],"into":[125],"for":[127,142,158],"assigning":[128],"distinct":[130],"identifier":[131],"each":[133],"recognized":[134],"entity.":[135],"provides":[138],"Web":[140,156],"service":[141,157],"tagging":[143],"PubMed":[146],"articles":[147],"or":[148],"raw":[149],"text.":[150],"Researchers":[151],"can":[152],"use":[153],"their":[159],"tasks,":[162],"discovery,":[168],"retrieval,":[170],"question":[171],"answering,":[172],"relation":[174],"extraction.":[175],"application":[177],"programming":[178],"interfaces":[179],"demonstrations":[181],"publicly":[185],"available":[186],"at":[187],"<uri":[188],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[189],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">https://bern.korea.ac.kr</uri>":[190],".":[191]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":25},{"year":2019,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
