{"id":"https://openalex.org/W2943683582","doi":"https://doi.org/10.1109/access.2019.2913084","title":"RNDEtree: Regulatory Network With Differential Equation Based on Flexible Neural Tree With Novel Criterion Function","display_name":"RNDEtree: Regulatory Network With Differential Equation Based on Flexible Neural Tree With Novel Criterion Function","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2943683582","doi":"https://doi.org/10.1109/access.2019.2913084","mag":"2943683582"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2913084","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2913084","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08704711.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08704711.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007584947","display_name":"Bin Yang","orcid":"https://orcid.org/0000-0001-6879-7069"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Yang","raw_affiliation_strings":["School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030950144","display_name":"Wenzheng Bao","orcid":"https://orcid.org/0000-0002-1471-5432"},"institutions":[{"id":"https://openalex.org/I124841900","display_name":"Xuzhou University of Technology","ror":"https://ror.org/02315by94","country_code":"CN","type":"education","lineage":["https://openalex.org/I124841900"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenzheng Bao","raw_affiliation_strings":["School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-1471-5432","affiliations":[{"raw_affiliation_string":"School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China","institution_ids":["https://openalex.org/I124841900"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.6061,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.64657275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"7","issue":null,"first_page":"58255","last_page":"58263"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6511023044586182},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5537718534469604},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5521751642227173},{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.5306605100631714},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.5288257002830505},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.5022585391998291},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4831351935863495},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.43856281042099},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40733593702316284},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.391876757144928},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.3607960343360901},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28808361291885376}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6511023044586182},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5537718534469604},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5521751642227173},{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.5306605100631714},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.5288257002830505},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.5022585391998291},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4831351935863495},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.43856281042099},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40733593702316284},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.391876757144928},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.3607960343360901},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28808361291885376},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2019.2913084","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2913084","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08704711.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f69bccca31c54c94ad2f01a6b1f7666f","is_oa":true,"landing_page_url":"https://doaj.org/article/f69bccca31c54c94ad2f01a6b1f7666f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 58255-58263 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2913084","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2913084","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08704711.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G213157282","display_name":null,"funder_award_id":"2014BS13","funder_id":"https://openalex.org/F4320325428","funder_display_name":"Zaozhuang University"},{"id":"https://openalex.org/G2705072599","display_name":null,"funder_award_id":"61702445","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G313092613","display_name":null,"funder_award_id":"2014BS13","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4566069544","display_name":null,"funder_award_id":"ZR2015PF007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4776171345","display_name":null,"funder_award_id":"ZR2015PF007","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G5601923137","display_name":null,"funder_award_id":"2015YY02","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6668634586","display_name":null,"funder_award_id":"61702445","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7074312082","display_name":null,"funder_award_id":"2014BS13","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G7117671789","display_name":null,"funder_award_id":"61702445","funder_id":"https://openalex.org/F4320325428","funder_display_name":"Zaozhuang University"},{"id":"https://openalex.org/G7917009979","display_name":null,"funder_award_id":"ZR2015PF007","funder_id":"https://openalex.org/F4320325428","funder_display_name":"Zaozhuang University"},{"id":"https://openalex.org/G8674681116","display_name":null,"funder_award_id":"2015YY02","funder_id":"https://openalex.org/F4320325428","funder_display_name":"Zaozhuang University"},{"id":"https://openalex.org/G8828821035","display_name":null,"funder_award_id":"2015YY02","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320325428","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2943683582.pdf","grobid_xml":"https://content.openalex.org/works/W2943683582.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W137929096","https://openalex.org/W1253096047","https://openalex.org/W1544971075","https://openalex.org/W1550531341","https://openalex.org/W1973632067","https://openalex.org/W1976199261","https://openalex.org/W1987526935","https://openalex.org/W1989652873","https://openalex.org/W1998987571","https://openalex.org/W2009292718","https://openalex.org/W2010996621","https://openalex.org/W2012733121","https://openalex.org/W2018462761","https://openalex.org/W2023270212","https://openalex.org/W2025367085","https://openalex.org/W2036044151","https://openalex.org/W2047999004","https://openalex.org/W2048677619","https://openalex.org/W2054331129","https://openalex.org/W2056296562","https://openalex.org/W2061505806","https://openalex.org/W2076513103","https://openalex.org/W2088343152","https://openalex.org/W2106287359","https://openalex.org/W2106945333","https://openalex.org/W2111384508","https://openalex.org/W2113041803","https://openalex.org/W2113771037","https://openalex.org/W2131550814","https://openalex.org/W2131987814","https://openalex.org/W2140154342","https://openalex.org/W2152992255","https://openalex.org/W2155898089","https://openalex.org/W2156716434","https://openalex.org/W2160326314","https://openalex.org/W2161922735","https://openalex.org/W2163296115","https://openalex.org/W2321444065","https://openalex.org/W2323257522","https://openalex.org/W2331388630","https://openalex.org/W2345208410","https://openalex.org/W2557563881","https://openalex.org/W2896688833","https://openalex.org/W4250521096","https://openalex.org/W6605545324","https://openalex.org/W6657064664"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W2043671984"],"abstract_inverted_index":{"Gene":[0],"regulatory":[1],"network":[2],"(GRN)":[3],"could":[4,184],"provide":[5],"guidance":[6],"for":[7],"understanding":[8],"the":[9,35,65,68,83,99,107,115,118,125,162,166,181,190],"internal":[10],"laws":[11],"of":[12,67,87,101,117,128,154],"biological":[13,171],"phenomena":[14],"and":[15,26,106,140,169],"analyzing":[16],"several":[17],"diseases.":[18],"Ordinary":[19],"differential":[20,54,90],"equation":[21,55,91],"model,":[22,73],"which":[23,46,138],"owns":[24],"continuity":[25],"flexibility,":[27],"has":[28],"been":[29],"utilized":[30,80,112],"to":[31,63,81,97,113,123],"identify":[32],"GRN":[33,69,188],"over":[34],"past":[36],"decade.":[37],"In":[38,71,121],"this":[39,72,129],"paper,":[40],"we":[41],"propose":[42],"a":[43,51,59,74,102,131],"novel":[44,132],"algorithm,":[45],"is":[47,95,111,135],"named":[48],"as":[49],"RNDEtree,":[50],"nonlinear":[52,84],"ordinary":[53,89],"model":[56],"based":[57],"on":[58],"flexible":[60,75,103],"neural":[61,76,104],"tree":[62,77],"improve":[64,124],"accuracy":[66],"reconstruction.":[70],"can":[78,158],"be":[79,159],"approximate":[82],"regulation":[85],"function":[86,134],"an":[88],"model.":[92,120],"Multiexpression":[93],"programming":[94],"proposed":[96,156,182],"evolve":[98],"structure":[100],"tree,":[105],"brainstorm":[108],"optimization":[109],"algorithm":[110,157],"optimize":[114],"parameters":[116],"RNDEtree":[119],"order":[122],"false-positive":[126],"ratio":[127],"method,":[130],"fitness":[133],"proposed,":[136],"in":[137,173],"sparse":[139],"minimum":[141],"redundancy":[142],"maximum":[143],"relevance":[144],"(mRMR)":[145],"terms":[146],"are":[147],"considered":[148],"when":[149],"optimizing":[150],"RNDEtree.":[151],"The":[152,176],"performances":[153],"our":[155],"evaluated":[160],"by":[161],"benchmark":[163],"datasets":[164],"from":[165],"DREAM":[167],"challenge":[168],"real":[170],"dataset":[172],"E.":[174],"coli.":[175],"experimental":[177],"results":[178],"demonstrate":[179],"that":[180],"method":[183],"infer":[185],"more":[186],"correctly":[187],"than":[189],"other":[191],"state-the-art":[192],"methods.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2026-08-15T07:11:24.734988","created_date":"2025-10-10T00:00:00"}
