{"id":"https://openalex.org/W2920013165","doi":"https://doi.org/10.1109/access.2019.2900275","title":"IMKPse: Identification of Protein Malonylation Sites by the Key Features Into General PseAAC","display_name":"IMKPse: Identification of Protein Malonylation Sites by the Key Features Into General PseAAC","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2920013165","doi":"https://doi.org/10.1109/access.2019.2900275","mag":"2920013165"},"language":"en","primary_location":{"id":"doi:10.1109/access.2019.2900275","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2900275","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08660642.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08660642.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030950144","display_name":"Wenzheng Bao","orcid":"https://orcid.org/0000-0002-1471-5432"},"institutions":[{"id":"https://openalex.org/I124841900","display_name":"Xuzhou University of Technology","ror":"https://ror.org/02315by94","country_code":"CN","type":"education","lineage":["https://openalex.org/I124841900"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenzheng Bao","raw_affiliation_strings":["School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-1471-5432","affiliations":[{"raw_affiliation_string":"School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China","institution_ids":["https://openalex.org/I124841900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007584947","display_name":"Bin Yang","orcid":"https://orcid.org/0000-0001-6879-7069"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Yang","raw_affiliation_strings":["School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113170254","display_name":"De-Shuang Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100391475","display_name":"Dong Wang","orcid":"https://orcid.org/0000-0002-4437-7702"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Wang","raw_affiliation_strings":["School of Information Science, University of Jinan, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science, University of Jinan, Jinan, China","institution_ids":["https://openalex.org/I34949971"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453144","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0001-5378-6404"},"institutions":[{"id":"https://openalex.org/I177388780","display_name":"Xuzhou Medical College","ror":"https://ror.org/04fe7hy80","country_code":"CN","type":"education","lineage":["https://openalex.org/I177388780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Liu","raw_affiliation_strings":["Affiliated Hospital, Xuzhou Medical University, Xuzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Affiliated Hospital, Xuzhou Medical University, Xuzhou, China","institution_ids":["https://openalex.org/I177388780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036479222","display_name":"Yuehui Chen","orcid":"https://orcid.org/0000-0002-5265-903X"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue-Hui Chen","raw_affiliation_strings":["School of Information Science, University of Jinan, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science, University of Jinan, Jinan, China","institution_ids":["https://openalex.org/I34949971"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100615025","display_name":"Rong Bao","orcid":"https://orcid.org/0000-0003-4762-2862"},"institutions":[{"id":"https://openalex.org/I124841900","display_name":"Xuzhou University of Technology","ror":"https://ror.org/02315by94","country_code":"CN","type":"education","lineage":["https://openalex.org/I124841900"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Bao","raw_affiliation_strings":["School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China","institution_ids":["https://openalex.org/I124841900"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":2.1543,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.88084986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":null,"first_page":"54073","last_page":"54083"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.778296709060669},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6795843839645386},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6198695302009583},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5792198181152344},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.49814462661743164},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4504290223121643},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4466792643070221},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.42260611057281494},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39904844760894775},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3560639023780823},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.2860235571861267},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19656896591186523},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1696232557296753}],"concepts":[{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.778296709060669},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6795843839645386},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6198695302009583},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5792198181152344},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.49814462661743164},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4504290223121643},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4466792643070221},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.42260611057281494},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39904844760894775},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3560639023780823},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.2860235571861267},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19656896591186523},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1696232557296753},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2019.2900275","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2900275","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08660642.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f00bde19fd2c410aaaae2e2bc4010649","is_oa":true,"landing_page_url":"https://doaj.org/article/f00bde19fd2c410aaaae2e2bc4010649","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 7, Pp 54073-54083 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2019.2900275","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2019.2900275","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8600701/08660642.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5400000214576721}],"awards":[{"id":"https://openalex.org/G1851553357","display_name":null,"funder_award_id":"61873270","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2144258250","display_name":null,"funder_award_id":"61873270","funder_id":"https://openalex.org/F4320326181","funder_display_name":"National Aerospace Science Foundation of China"},{"id":"https://openalex.org/G6668634586","display_name":null,"funder_award_id":"61702445","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7652912599","display_name":null,"funder_award_id":"61702445","funder_id":"https://openalex.org/F4320326181","funder_display_name":"National Aerospace Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326181","display_name":"National Aerospace Science Foundation of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2920013165.pdf","grobid_xml":"https://content.openalex.org/works/W2920013165.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1411285485","https://openalex.org/W1494484168","https://openalex.org/W1943237984","https://openalex.org/W1976873804","https://openalex.org/W1979187818","https://openalex.org/W1981091069","https://openalex.org/W1987713050","https://openalex.org/W1995173448","https://openalex.org/W1999118478","https://openalex.org/W2009540433","https://openalex.org/W2010706742","https://openalex.org/W2030922238","https://openalex.org/W2031110581","https://openalex.org/W2043148368","https://openalex.org/W2049324939","https://openalex.org/W2049868369","https://openalex.org/W2053691011","https://openalex.org/W2053765706","https://openalex.org/W2069217708","https://openalex.org/W2079056345","https://openalex.org/W2083436950","https://openalex.org/W2084246818","https://openalex.org/W2087158205","https://openalex.org/W2090561245","https://openalex.org/W2094764962","https://openalex.org/W2096083625","https://openalex.org/W2098952156","https://openalex.org/W2113771037","https://openalex.org/W2114024619","https://openalex.org/W2138710658","https://openalex.org/W2143658931","https://openalex.org/W2151984950","https://openalex.org/W2156690214","https://openalex.org/W2159199134","https://openalex.org/W2162864159","https://openalex.org/W2167666169","https://openalex.org/W2172162168","https://openalex.org/W2205505631","https://openalex.org/W2313411748","https://openalex.org/W2344859163","https://openalex.org/W2345938495","https://openalex.org/W2367828680","https://openalex.org/W2387572940","https://openalex.org/W2397556949","https://openalex.org/W2420474086","https://openalex.org/W2471518332","https://openalex.org/W2472513547","https://openalex.org/W2521877993","https://openalex.org/W2598495276","https://openalex.org/W2599457435","https://openalex.org/W2605516250","https://openalex.org/W2607378088","https://openalex.org/W2609394459","https://openalex.org/W2735158968","https://openalex.org/W2735428840","https://openalex.org/W2736742854","https://openalex.org/W2749697459","https://openalex.org/W2752744122","https://openalex.org/W2762890495","https://openalex.org/W2768705872","https://openalex.org/W2776589520","https://openalex.org/W2803011470","https://openalex.org/W4232920930","https://openalex.org/W6735888752","https://openalex.org/W6736353592","https://openalex.org/W6741307864"],"related_works":["https://openalex.org/W4362597605","https://openalex.org/W1574414179","https://openalex.org/W4297676672","https://openalex.org/W3009056573","https://openalex.org/W2989932438","https://openalex.org/W4387297750","https://openalex.org/W2186333919","https://openalex.org/W2885665929","https://openalex.org/W2982428536","https://openalex.org/W2394308601"],"abstract_inverted_index":{"Currently,":[0],"lysine":[1,21],"malonylation":[2],"is":[3,69,235],"treated":[4],"as":[5,96,105,137],"one":[6],"of":[7,18,29,57,121,144,175,194,233],"the":[8,16,27,89,97,113,118,134,138,142,151,156,201,212,220],"most":[9],"key":[10],"protein":[11],"post":[12],"translational":[13],"modification":[14,37,58],"in":[15,47,64,168,180,200],"field":[17],"biology":[19,78],"and":[20,62,71,75,100,178,186,197],"plays":[22],"a":[23,148],"significant":[24],"role":[25],"for":[26],"regulation":[28],"several":[30],"biological":[31,45],"processions.":[32],"Therefore,":[33],"accurately":[34],"identification":[35],"such":[36,55,126,147],"type":[38,56],"will":[39],"make":[40,208],"contributions":[41],"to":[42,53,73,80,110,153],"understanding":[43],"their":[44],"processions":[46],"this":[48,85],"field.":[49],"The":[50,216],"experimental":[51],"approaches":[52,79],"identify":[54,81],"sites":[59],"are":[60],"time-wasting":[61],"laborious":[63],"some":[65,209],"degree.":[66],"So,":[67],"it":[68],"necessary":[70],"urgent":[72],"design":[74],"propose":[76],"computational":[77],"these":[82],"sites.":[83],"In":[84,108,204],"paper,":[86],"we":[87,116,207],"proposed":[88,221],"IMKPse":[90,171,190],"model":[91],"that":[92,219],"utilized":[93,117],"general":[94,135],"PseAAC":[95,136],"classification":[98,106],"features":[99,159],"employed":[101,129],"flexible":[102],"neural":[103],"tree":[104],"model.":[107],"order":[109],"deal":[111],"with":[112],"overfitting":[114],"problem,":[115],"independent":[119,202],"datasets":[120],"each":[122],"species.":[123],"More":[124],"specifically,":[125],"algorithm":[127,222],"initially":[128],"amino":[130],"acid":[131],"properties":[132],"from":[133],"candidate":[139,145],"features.":[140,215],"With":[141],"comparison":[143],"features,":[146],"method":[149],"has":[150,223],"ability":[152],"finding":[154],"out":[155],"top":[157,213],"five":[158,214],"among":[160,211],"them.":[161],"When":[162],"evaluated":[163],"on":[164],"three":[165,181],"data":[166],"sets":[167],"testing":[169],"set,":[170],"obtained":[172,191],"MCC":[173,192],"value":[174,193],"0.9185,":[176],"0.9097,":[177],"0.9525":[179],"species,":[182],"including":[183],"E.coli,":[184],"M.musculus,":[185],"H.sapiens,":[187],"respectively.":[188],"Meanwhile,":[189],"0.9149,":[195],"0.9060,":[196],"0.9467,":[198],"respectively,":[199],"sets.":[203],"addition,":[205],"then,":[206],"combinations":[210],"results":[217],"demonstrate":[218],"superior":[224],"performances":[225],"than":[226],"other":[227],"approaches.":[228],"A":[229],"user-friendly":[230],"web":[231],"resource":[232],"IMKPSE":[234],"available":[236],"at":[237],"http://121.250.173.184.":[238]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
