{"id":"https://openalex.org/W2895143973","doi":"https://doi.org/10.1109/access.2018.2872496","title":"Classifying Protein Specific Residue Structures Based on Graph Mining","display_name":"Classifying Protein Specific Residue Structures Based on Graph Mining","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2895143973","doi":"https://doi.org/10.1109/access.2018.2872496","mag":"2895143973"},"language":"en","primary_location":{"id":"doi:10.1109/access.2018.2872496","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2872496","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2018.2872496","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103047340","display_name":"Sun\u2010Yuan Hsieh","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Sun-Yuan Hsieh","raw_affiliation_strings":["Department of Computer Science and Information Engineering, Institute of Medical Information, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":"https://orcid.org/0000-0003-4746-3179","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, Institute of Medical Information, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015598447","display_name":"Chia\u2010Wei Lee","orcid":"https://orcid.org/0000-0002-5337-0473"},"institutions":[{"id":"https://openalex.org/I178613991","display_name":"National Taitung University","ror":"https://ror.org/05j9d8v51","country_code":"TW","type":"education","lineage":["https://openalex.org/I178613991"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Wei Lee","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taitung University, Taitung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taitung University, Taitung, Taiwan","institution_ids":["https://openalex.org/I178613991"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053054427","display_name":"Zongying Yang","orcid":"https://orcid.org/0000-0001-5634-648X"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Zong-Ying Yang","raw_affiliation_strings":["Institute of Medical Information, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088748651","display_name":"Heng-Wei Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Heng-Wei Wang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037568516","display_name":"Junhan Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jun-Han Yu","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016449606","display_name":"Bo-Cheng Chan","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Bo-Cheng Chan","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053761598","display_name":"Tai-Ling Ye","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tai-Ling Ye","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5103047340"],"corresponding_institution_ids":["https://openalex.org/I91807558"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.2784,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57922057,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"6","issue":null,"first_page":"55828","last_page":"55837"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5952903628349304},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5347117185592651},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.44018277525901794},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4391826093196869},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.36667943000793457},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3656349778175354},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34222862124443054},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23375162482261658},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1429852843284607}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5952903628349304},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5347117185592651},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.44018277525901794},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4391826093196869},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.36667943000793457},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3656349778175354},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34222862124443054},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23375162482261658},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1429852843284607},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2018.2872496","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2872496","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:d43c1abed03b4afd9f8e3df3c7971fb0","is_oa":true,"landing_page_url":"https://doaj.org/article/d43c1abed03b4afd9f8e3df3c7971fb0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 6, Pp 55828-55837 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2018.2872496","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2872496","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8302027792","display_name":null,"funder_award_id":"MOST 105-2811-E-006-022","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W4909282","https://openalex.org/W1641749581","https://openalex.org/W1900594907","https://openalex.org/W1968810669","https://openalex.org/W1969223757","https://openalex.org/W1970259423","https://openalex.org/W1975567268","https://openalex.org/W1980429866","https://openalex.org/W1998931880","https://openalex.org/W2006927892","https://openalex.org/W2026445589","https://openalex.org/W2027943354","https://openalex.org/W2028492648","https://openalex.org/W2030517878","https://openalex.org/W2048792959","https://openalex.org/W2053848019","https://openalex.org/W2059067075","https://openalex.org/W2064466867","https://openalex.org/W2073901918","https://openalex.org/W2082835240","https://openalex.org/W2091544039","https://openalex.org/W2096652320","https://openalex.org/W2097056866","https://openalex.org/W2099013368","https://openalex.org/W2105437322","https://openalex.org/W2111941604","https://openalex.org/W2118349699","https://openalex.org/W2123388283","https://openalex.org/W2123473763","https://openalex.org/W2124145810","https://openalex.org/W2131374321","https://openalex.org/W2133609791","https://openalex.org/W2136145671","https://openalex.org/W2136593687","https://openalex.org/W2149715754","https://openalex.org/W2158714788","https://openalex.org/W2160742561","https://openalex.org/W2170726034","https://openalex.org/W3101574558","https://openalex.org/W3141776272","https://openalex.org/W6600201224","https://openalex.org/W6681828151","https://openalex.org/W6685146747"],"related_works":["https://openalex.org/W3126783617","https://openalex.org/W3093468851","https://openalex.org/W4280624450","https://openalex.org/W2121688928","https://openalex.org/W2732388178","https://openalex.org/W2806488847","https://openalex.org/W2185518315","https://openalex.org/W4388749535","https://openalex.org/W4353055924","https://openalex.org/W1495233806"],"abstract_inverted_index":{"We":[0],"proposed":[1,54],"a":[2,7,32],"3-D":[3],"protein":[4,50,77],"structure":[5],"using":[6],"simple":[8],"and":[9,17,61],"connected":[10],"graph,":[11],"where":[12],"nodes":[13],"indicate":[14],"amino":[15,23],"acids":[16],"edges":[18],"represent":[19],"contact":[20],"distances":[21],"between":[22],"acids.":[24],"Based":[25],"on":[26],"these":[27,42],"graph":[28,33],"structures,":[29],"we":[30],"present":[31],"mining":[34],"algorithm":[35,55],"to":[36,48],"determine":[37],"the":[38,80],"crucial":[39],"subgraphs":[40],"in":[41,68,75],"graphs,":[43],"which":[44,69],"can":[45],"be":[46],"applied":[47],"classify":[49],"structural":[51],"families.":[52],"The":[53],"was":[56,66],"compared":[57],"with":[58],"BLAST,":[59],"BLAT,":[60],"DALI.":[62],"Moreover,":[63],"an":[64],"experiment":[65],"conducted,":[67],"characteristic":[70],"sub-structural":[71],"patterns":[72],"were":[73],"found":[74],"several":[76],"families":[78],"within":[79],"Protein":[81],"Data":[82],"Bank.":[83]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
