{"id":"https://openalex.org/W2897268845","doi":"https://doi.org/10.1109/access.2018.2862885","title":"Gastroenterology Ontology Construction Using Synonym Identification and Relation Extraction","display_name":"Gastroenterology Ontology Construction Using Synonym Identification and Relation Extraction","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2897268845","doi":"https://doi.org/10.1109/access.2018.2862885","mag":"2897268845"},"language":"en","primary_location":{"id":"doi:10.1109/access.2018.2862885","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2862885","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2018.2862885","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074799043","display_name":"Ying Shen","orcid":"https://orcid.org/0000-0002-3220-904X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ying Shen","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046576694","display_name":"Yaliang Li","orcid":"https://orcid.org/0000-0002-4204-6096"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yaliang Li","raw_affiliation_strings":["Tencent Medical AI Lab, Palo Alto, CA, USA"],"affiliations":[{"raw_affiliation_string":"Tencent Medical AI Lab, Palo Alto, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050035602","display_name":"Yang Deng","orcid":"https://orcid.org/0000-0002-8122-5943"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Deng","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406022","display_name":"Jin Zhang","orcid":"https://orcid.org/0000-0003-4871-6318"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin Zhang","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083369457","display_name":"Min Yang","orcid":"https://orcid.org/0000-0001-7345-5071"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Yang","raw_affiliation_strings":["Chinese Academy of Sciences, SIAT, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Chinese Academy of Sciences, SIAT, Beijing, China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100665836","display_name":"Jinsong Chen","orcid":"https://orcid.org/0009-0000-0977-2507"},"institutions":[{"id":"https://openalex.org/I4210104539","display_name":"Shenzhen Maternity and Child Healthcare Hospital","ror":"https://ror.org/01me2d674","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210104539"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinsong Chen","raw_affiliation_strings":["Shenzhen Maternal and Child Healthcare Hospital, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Maternal and Child Healthcare Hospital, Shenzhen, China","institution_ids":["https://openalex.org/I4210104539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082548465","display_name":"Shangchun Si","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shangchun Si","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078920845","display_name":"Kai Lei","orcid":"https://orcid.org/0000-0001-9197-895X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Lei","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology, School of Electronics and Computer Engineering, Peking University, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5074799043"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.6769,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.78091464,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"6","issue":null,"first_page":"52095","last_page":"52104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7812073230743408},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7705374956130981},{"id":"https://openalex.org/keywords/synonym","display_name":"Synonym (taxonomy)","score":0.7081447839736938},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6770347952842712},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6037000417709351},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5795895457267761},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5318070650100708},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.503257691860199},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.5019512176513672},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.47894006967544556},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4589709937572479},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.45020240545272827},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4076094925403595},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.3883495628833771},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.3606671690940857},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2363593876361847}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7812073230743408},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7705374956130981},{"id":"https://openalex.org/C173483453","wikidata":"https://www.wikidata.org/wiki/Q1040689","display_name":"Synonym (taxonomy)","level":3,"score":0.7081447839736938},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6770347952842712},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6037000417709351},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5795895457267761},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5318070650100708},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.503257691860199},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.5019512176513672},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.47894006967544556},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4589709937572479},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.45020240545272827},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4076094925403595},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.3883495628833771},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.3606671690940857},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2363593876361847},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C157369684","wikidata":"https://www.wikidata.org/wiki/Q34740","display_name":"Genus","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2018.2862885","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2862885","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:4e0d7490ce094464b32b4ec14d932fe0","is_oa":true,"landing_page_url":"https://doaj.org/article/4e0d7490ce094464b32b4ec14d932fe0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 6, Pp 52095-52104 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2018.2862885","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2862885","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5680510199","display_name":null,"funder_award_id":"61602013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W8084982","https://openalex.org/W80901221","https://openalex.org/W174427690","https://openalex.org/W1241017059","https://openalex.org/W1566018662","https://openalex.org/W1567365482","https://openalex.org/W1889268436","https://openalex.org/W1912843035","https://openalex.org/W1973827879","https://openalex.org/W1981021538","https://openalex.org/W1984020445","https://openalex.org/W1988494453","https://openalex.org/W2042385167","https://openalex.org/W2068737686","https://openalex.org/W2093103229","https://openalex.org/W2093641143","https://openalex.org/W2094728533","https://openalex.org/W2111520190","https://openalex.org/W2116039033","https://openalex.org/W2138605095","https://openalex.org/W2149393279","https://openalex.org/W2155454737","https://openalex.org/W2160770043","https://openalex.org/W2165897980","https://openalex.org/W2250418535","https://openalex.org/W2250521169","https://openalex.org/W2251135946","https://openalex.org/W2293412761","https://openalex.org/W2515462165","https://openalex.org/W2610312603","https://openalex.org/W2741237963","https://openalex.org/W2744007523","https://openalex.org/W2765429107","https://openalex.org/W2769230674","https://openalex.org/W2950371387","https://openalex.org/W2963171262","https://openalex.org/W2963355447","https://openalex.org/W3098991821","https://openalex.org/W3100606745","https://openalex.org/W6600328913","https://openalex.org/W6607091552","https://openalex.org/W6633661181","https://openalex.org/W6634133269","https://openalex.org/W6639364127","https://openalex.org/W6691723933"],"related_works":["https://openalex.org/W26549824","https://openalex.org/W2732632690","https://openalex.org/W1506177826","https://openalex.org/W72173000","https://openalex.org/W2726617685","https://openalex.org/W2357775360","https://openalex.org/W2608149786","https://openalex.org/W2130691104","https://openalex.org/W2365397974","https://openalex.org/W2396086199"],"abstract_inverted_index":{"Ontology":[0],"plays":[1],"an":[2],"increasingly":[3],"important":[4],"role":[5],"in":[6,18],"knowledge":[7],"management":[8],"and":[9,26,30,56,92,95,122,134,151,158],"the":[10,38,66,70,118,127,155],"semantic":[11],"Web.":[12],"However,":[13],"ontology":[14,61,68,73,112,140,159],"cannot":[15],"perform":[16],"well":[17],"realistic":[19],"diagnosis":[20],"reasoning":[21],"unless":[22],"it":[23],"contains":[24],"timely":[25],"accurate":[27],"medical":[28],"information":[29,98,108],"its":[31],"individual":[32],"items":[33],"display":[34],"all":[35],"attributes":[36],"of":[37,85,160],"categories":[39],"they":[40],"belong":[41],"to.":[42],"In":[43,75],"this":[44,161],"paper,":[45],"we":[46,64,77,152],"present":[47],"a":[48,82,137],"method":[49,125],"that":[50,117],"extracts":[51],"synonyms":[52],"along":[53],"with":[54,131,142],"concepts":[55],"their":[57],"relationships":[58],"for":[59,72,103,111],"gastroenterology":[60,144],"construction.":[62],"Specifically,":[63],"reuse":[65],"existing":[67,143],"as":[69],"basis":[71],"completion.":[74,113],"addition,":[76],"conduct":[78],"synonym":[79,120],"identification":[80,121],"through":[81],"combined":[83],"application":[84],"global":[86],"context":[87,90],"features,":[88,91,94],"local":[89],"medical-specific":[93],"incorporate":[96],"dependency":[97],"into":[99],"deep":[100],"neural":[101],"networks":[102],"relation":[104,123],"extraction.":[105],"The":[106],"extracted":[107],"is":[109],"merged":[110],"Experimental":[114],"results":[115,148],"demonstrate":[116],"proposed":[119],"extraction":[124],"achieves":[126],"best":[128],"performance":[129],"compared":[130,141],"state-of-the-art":[132],"methods":[133],"also":[135],"builds":[136],"more":[138],"complete":[139],"disease":[145],"ontologies.":[146],"Our":[147],"are":[149],"reproducible,":[150],"will":[153],"release":[154],"source":[156],"code":[157],"work":[162],"after":[163],"publication:":[164],"https://github.com/shenyingpku/gastrointestinal_owl.":[165]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
