{"id":"https://openalex.org/W2888841751","doi":"https://doi.org/10.1109/access.2018.2861418","title":"Efficient Kidney Segmentation in Micro-CT Based on Multi-Atlas Registration and Random Forests","display_name":"Efficient Kidney Segmentation in Micro-CT Based on Multi-Atlas Registration and Random Forests","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2888841751","doi":"https://doi.org/10.1109/access.2018.2861418","mag":"2888841751"},"language":"en","primary_location":{"id":"doi:10.1109/access.2018.2861418","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2861418","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2018.2861418","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021602753","display_name":"Fengjun Zhao","orcid":"https://orcid.org/0000-0001-8658-8412"},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fengjun Zhao","raw_affiliation_strings":["School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","School of Information Sciences and Technology, Northwest University, Xi'an, China"],"raw_orcid":"https://orcid.org/0000-0001-8658-8412","affiliations":[{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi'an, China","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043954936","display_name":"Pei Gao","orcid":"https://orcid.org/0000-0003-4410-8075"},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pei Gao","raw_affiliation_strings":["School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","School of Information Sciences and Technology, Northwest University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi'an, China","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078808934","display_name":"Haowen Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haowen Hu","raw_affiliation_strings":["School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","School of Information Sciences and Technology, Northwest University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi'an, China","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044123947","display_name":"Xuelei He","orcid":"https://orcid.org/0000-0002-8624-0130"},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuelei He","raw_affiliation_strings":["School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","School of Information Sciences and Technology, Northwest University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi'an, China","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014891352","display_name":"Yuqing Hou","orcid":"https://orcid.org/0000-0002-7038-675X"},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuqing Hou","raw_affiliation_strings":["School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","School of Information Sciences and Technology, Northwest University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi'an, China","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060690411","display_name":"Xiaowei He","orcid":"https://orcid.org/0000-0003-2126-178X"},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaowei He","raw_affiliation_strings":["School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","School of Information Sciences and Technology, Northwest University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi\u2019an, China","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"School of Information Sciences and Technology, Northwest University, Xi'an, China","institution_ids":["https://openalex.org/I37802460"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5021602753"],"corresponding_institution_ids":["https://openalex.org/I37802460"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.9543,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.81096321,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"6","issue":null,"first_page":"43712","last_page":"43723"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12386","display_name":"Advanced X-ray and CT Imaging","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.8031829595565796},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7919186353683472},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7062618732452393},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6311190724372864},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.61992347240448},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.6183171272277832},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.5594543218612671},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5404513478279114},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.45322924852371216},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.45117560029029846},{"id":"https://openalex.org/keywords/contrast","display_name":"Contrast (vision)","score":0.42753535509109497},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4138838052749634},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2155528962612152},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1372801661491394},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.10735481977462769},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.07771986722946167}],"concepts":[{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.8031829595565796},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7919186353683472},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7062618732452393},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6311190724372864},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.61992347240448},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.6183171272277832},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.5594543218612671},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5404513478279114},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.45322924852371216},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.45117560029029846},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.42753535509109497},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4138838052749634},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2155528962612152},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1372801661491394},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.10735481977462769},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.07771986722946167},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2018.2861418","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2861418","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:4c8d4e02c8f1434f896a237af6f53b4f","is_oa":true,"landing_page_url":"https://doaj.org/article/4c8d4e02c8f1434f896a237af6f53b4f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 6, Pp 43712-43723 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2018.2861418","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2861418","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1746601774","display_name":null,"funder_award_id":"2016M602851","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G2974524634","display_name":null,"funder_award_id":"11571012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3083817106","display_name":null,"funder_award_id":"61601363","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8603925037","display_name":null,"funder_award_id":"61701403","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W111214574","https://openalex.org/W116922145","https://openalex.org/W1934726605","https://openalex.org/W1963830612","https://openalex.org/W1965070352","https://openalex.org/W1979393293","https://openalex.org/W1991928838","https://openalex.org/W1992533954","https://openalex.org/W1994835334","https://openalex.org/W2005947232","https://openalex.org/W2016724224","https://openalex.org/W2025432719","https://openalex.org/W2038952578","https://openalex.org/W2045390724","https://openalex.org/W2046758959","https://openalex.org/W2049516470","https://openalex.org/W2049981393","https://openalex.org/W2052381310","https://openalex.org/W2070644180","https://openalex.org/W2104276184","https://openalex.org/W2129259959","https://openalex.org/W2153810084","https://openalex.org/W2169197685","https://openalex.org/W2171417304","https://openalex.org/W2206085672","https://openalex.org/W2229412420","https://openalex.org/W2342476115","https://openalex.org/W2518421583","https://openalex.org/W2527062305","https://openalex.org/W2613326680","https://openalex.org/W2619004901","https://openalex.org/W2735975467","https://openalex.org/W2755984634","https://openalex.org/W2757657459","https://openalex.org/W4233857083"],"related_works":["https://openalex.org/W3027020613","https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2016533837","https://openalex.org/W2324878645","https://openalex.org/W2803101231","https://openalex.org/W4284509","https://openalex.org/W1990901612","https://openalex.org/W2038239089"],"abstract_inverted_index":{"Micro-computed":[0],"tomography":[1],"(micro-CT)":[2],"provides":[3],"an":[4,39,69],"in":[5,29,44,242],"vivo":[6],"high-resolution":[7],"preclinical":[8],"imaging":[9,31,159],"for":[10,240],"murine":[11,27],"kidneys.":[12,74,149],"However,":[13],"due":[14],"to":[15,89,115,124],"the":[16,65,77,90,106,132,139,145,165,176,180,194,202,230],"relatively":[17],"low":[18],"dosage":[19],"of":[20,26,62,73,79,121,141,148,160,167,197,206,221,229,246],"X-rays,":[21],"accurate":[22],"and":[23,52,67,85,102,111,138,163,171,188,199,201,208,213,218,227],"efficient":[24,40],"segmentation":[25,42,147,244],"kidneys":[28,63,88],"micro-CT":[30,45,92,158],"remains":[32],"challenging.":[33],"In":[34],"this":[35],"paper,":[36],"we":[37,57,95,143],"proposed":[38,177,235],"kidney":[41,126],"method":[43,236],"images":[46],"based":[47,81],"on":[48,82,154,211],"multi-atlas":[49],"registration":[50],"(MAR)":[51],"random":[53],"forests":[54],"(RFs).":[55],"First,":[56],"constructed":[58],"a":[59,116],"probability":[60],"map":[61],"by":[64,157],"MAR":[66,80],"obtained":[68,144],"initial":[70,133],"shape":[71,134,186],"estimation":[72],"We":[75],"acquired":[76,156],"transformations":[78],"high-contrast":[83],"organs":[84],"then":[86],"mapped":[87],"new":[91],"images.":[93],"Second,":[94],"extracted":[96],"multiple":[97],"features":[98,114],"(including":[99],"intensity,":[100],"texture,":[101],"context":[103],"features)":[104],"from":[105],"voxels":[107],"with":[108,135,162,193],"lower":[109],"probabilities":[110,137],"fed":[112],"these":[113],"RF":[117,122],"classifier.":[118],"The":[119,150,173,216,234],"role":[120],"is":[123],"fine-tune":[125],"boundaries":[127],"after":[128],"MAR.":[129],"Finally,":[130],"combining":[131],"high":[136],"fine-tuning":[140],"RF,":[142],"final":[146],"experiments":[151],"were":[152,224],"conducted":[153],"datasets":[155],"mice":[161],"without":[164],"administration":[166],"contrast":[168],"agent":[169],"(Dataset1":[170],"Dataset2).":[172],"results":[174],"demonstrated":[175],"MAR-RF":[178,223],"outperformed":[179],"level":[181],"sets,":[182],"statistical-atlas":[183],"registration,":[184],"active":[185],"model,":[187],"other":[189,243],"supervised":[190],"learning":[191],"methods,":[192],"Dice":[195],"coefficients":[196],"0.9766":[198],"0.9255,":[200],"mean":[203],"surface":[204],"distances":[205],"1.25":[207],"0.98":[209],"mm":[210],"Dataset1":[212],"Dataset2,":[214],"respectively.":[215,233],"training":[217],"prediction":[219],"time":[220],"our":[222],"only":[225],"37.04%":[226],"17.68%":[228],"compared":[231],"method,":[232],"has":[237],"great":[238],"potential":[239],"applications":[241],"tasks":[245],"computer-aided":[247],"diagnosis.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":6}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
