{"id":"https://openalex.org/W2793433991","doi":"https://doi.org/10.1109/access.2018.2806478","title":"Protein Function Prediction Using Function Associations in Protein\u2013Protein Interaction Network","display_name":"Protein Function Prediction Using Function Associations in Protein\u2013Protein Interaction Network","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2793433991","doi":"https://doi.org/10.1109/access.2018.2806478","mag":"2793433991"},"language":"en","primary_location":{"id":"doi:10.1109/access.2018.2806478","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2806478","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2018.2806478","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5120839754","display_name":"Pingping Sun","orcid":"https://orcid.org/0000-0002-9193-4321"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Pingping Sun","raw_affiliation_strings":["Institute of Computational Biology, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103082459","display_name":"Tan Xian","orcid":"https://orcid.org/0000-0002-8911-4703"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xian Tan","raw_affiliation_strings":["Institute of Computational Biology, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050130301","display_name":"Sijia Guo","orcid":"https://orcid.org/0000-0001-6922-4326"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sijia Guo","raw_affiliation_strings":["Institute of Computational Biology, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100636096","display_name":"Jingbo Zhang","orcid":"https://orcid.org/0000-0002-5683-9660"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingbo Zhang","raw_affiliation_strings":["Key Laboratory of Intelligent Information Processing of Jilin Universities, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Information Processing of Jilin Universities, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110550879","display_name":"Bojian Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bojian Sun","raw_affiliation_strings":["School of Information and Technology, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Technology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018063258","display_name":"Ning Du","orcid":"https://orcid.org/0000-0003-3025-4629"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning Du","raw_affiliation_strings":["School of Mathematics and Statistics, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452702","display_name":"Han Wang","orcid":"https://orcid.org/0000-0002-4302-1886"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Wang","raw_affiliation_strings":["Institute of Computational Biology, Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081386855","display_name":"Hui Sun","orcid":"https://orcid.org/0000-0002-1152-5932"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Sun","raw_affiliation_strings":["College of Humanities and Sciences of Northeast Normal University, Changchun, China"],"affiliations":[{"raw_affiliation_string":"College of Humanities and Sciences of Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5120839754"],"corresponding_institution_ids":["https://openalex.org/I184983240"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.0111,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.75176591,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"6","issue":null,"first_page":"30892","last_page":"30902"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5565071105957031},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5326715707778931},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5201083421707153},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.48088935017585754},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.4371633231639862},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.4246929883956909},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12896916270256042},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09490656852722168}],"concepts":[{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5565071105957031},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5326715707778931},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5201083421707153},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.48088935017585754},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.4371633231639862},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.4246929883956909},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12896916270256042},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09490656852722168},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2018.2806478","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2806478","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:0865e632d4ae48b6834da6fbfee9388c","is_oa":true,"landing_page_url":"https://doaj.org/article/0865e632d4ae48b6834da6fbfee9388c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 6, Pp 30892-30902 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2018.2806478","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2018.2806478","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1723261075","display_name":null,"funder_award_id":"41671379","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1735164465","display_name":null,"funder_award_id":"11501095","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2722029122","display_name":null,"funder_award_id":"20150101057JC","funder_id":"https://openalex.org/F4320335953","funder_display_name":"Jilin Scientific and Technological Development Program"},{"id":"https://openalex.org/G3291231463","display_name":null,"funder_award_id":"61502093","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8598606543","display_name":null,"funder_award_id":"20180520028JH","funder_id":"https://openalex.org/F4320335953","funder_display_name":"Jilin Scientific and Technological Development Program"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335953","display_name":"Jilin Scientific and Technological Development Program","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W132262220","https://openalex.org/W146125889","https://openalex.org/W1486817521","https://openalex.org/W1527927437","https://openalex.org/W1663797894","https://openalex.org/W1940963233","https://openalex.org/W1997996819","https://openalex.org/W2048467634","https://openalex.org/W2055043387","https://openalex.org/W2057545775","https://openalex.org/W2069389043","https://openalex.org/W2079665010","https://openalex.org/W2094517796","https://openalex.org/W2096939566","https://openalex.org/W2107276828","https://openalex.org/W2107710781","https://openalex.org/W2109715166","https://openalex.org/W2112651905","https://openalex.org/W2118712128","https://openalex.org/W2122863289","https://openalex.org/W2127563440","https://openalex.org/W2129026672","https://openalex.org/W2132781864","https://openalex.org/W2137213923","https://openalex.org/W2160875291","https://openalex.org/W2166468869","https://openalex.org/W2171403830","https://openalex.org/W2962735828","https://openalex.org/W4236236547","https://openalex.org/W6670200328","https://openalex.org/W6677758222","https://openalex.org/W6680642335"],"related_works":["https://openalex.org/W1970141274","https://openalex.org/W2181394498","https://openalex.org/W2414873431","https://openalex.org/W1987363726","https://openalex.org/W1598597336","https://openalex.org/W1511994447","https://openalex.org/W2586268529","https://openalex.org/W2287132924","https://openalex.org/W2125650596","https://openalex.org/W2131407941"],"abstract_inverted_index":{"In":[0,67,94,162],"recent":[1],"years,":[2],"the":[3,41,52,59,70,89,108,118,136,159,164,178],"rapid":[4],"development":[5],"of":[6,14,91,142,180],"high-throughput":[7],"technology":[8],"has":[9],"led":[10],"to":[11,65,102,116,177],"huge":[12],"amounts":[13],"protein\u2013protein":[15],"interaction":[16],"(PPI)":[17],"data":[18],"and":[19,125,152,171],"unannotated":[20],"protein":[21,26,104,128,181],"sequences.":[22],"Many":[23],"approaches":[24],"for":[25,46,88,127],"function":[27,49,61,105,129,154],"prediction":[28,160,179],"have":[29],"been":[30],"developed":[31],"which":[32,54],"use":[33,40],"PPI":[34,146],"networks":[35],"information.":[36],"Traditional":[37],"methods":[38],"usually":[39],"dependencies":[42,71,119,165],"among":[43,72,120,166],"interacting":[44],"proteins":[45,124,170],"each":[47],"same":[48,60],"only.":[50],"However,":[51],"functions":[53,121,167],"are":[55,62,78],"barely":[56],"linked":[57],"with":[58,75],"more":[63,79],"difficult":[64],"predict.":[66],"multi-label":[68],"settings,":[69],"related":[73],"instances":[74],"multiple":[76],"labels":[77],"complex;":[80],"rationally":[81],"using":[82],"these":[83],"associations":[84],"can":[85,156,173],"make":[86],"up":[87],"shortcomings":[90],"traditional":[92],"methods.":[93],"this":[95],"paper,":[96],"an":[97],"iterative":[98],"algorithm":[99,137],"is":[100,114],"applied":[101,176],"predict":[103],"based":[106,122,145,168],"on":[107,123,169],"new":[109],"network.":[110],"The":[111,131],"proposed":[112],"method":[113],"able":[115],"capture":[117],"interactions":[126,172],"prediction.":[130],"test":[132],"results":[133],"show":[134],"that":[135],"performs":[138],"better":[139],"than":[140],"most":[141],"existing":[143],"network":[144],"algorithms;":[147],"adding":[148],"sequence":[149],"similarity":[150],"edges":[151],"spread":[153],"information":[155],"really":[157],"improve":[158],"performance.":[161],"addition,":[163],"be":[174],"effectively":[175],"function.":[182]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2018-03-29T00:00:00"}
