{"id":"https://openalex.org/W2605004308","doi":"https://doi.org/10.1109/access.2017.2690664","title":"An Improved Archaeology Algorithm Based on Integrated Multi-Source Biological Information for Yeast Protein Interaction Network","display_name":"An Improved Archaeology Algorithm Based on Integrated Multi-Source Biological Information for Yeast Protein Interaction Network","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2605004308","doi":"https://doi.org/10.1109/access.2017.2690664","mag":"2605004308"},"language":"en","primary_location":{"id":"doi:10.1109/access.2017.2690664","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2017.2690664","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2017.2690664","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100406009","display_name":"Jin Zhang","orcid":"https://orcid.org/0000-0003-1688-5547"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]},{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jin Zhang","raw_affiliation_strings":["Business School, University of Shanghai for Science and Technology, Shanghai, China","Shandong Provincial Key Laboratory of Network Based Intelligent Computing, University of Jinan, Jinan, China"],"affiliations":[{"raw_affiliation_string":"Business School, University of Shanghai for Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I148128674"]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Network Based Intelligent Computing, University of Jinan, Jinan, China","institution_ids":["https://openalex.org/I34949971"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033829704","display_name":"Huijie Yang","orcid":"https://orcid.org/0000-0001-5985-245X"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huijie Yang","raw_affiliation_strings":["Business School, University of Shanghai for Science and Technology, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Business School, University of Shanghai for Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079301418","display_name":"Houbing Song","orcid":"https://orcid.org/0000-0003-2631-9223"},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Houbing Song","raw_affiliation_strings":["Department of Electrical and Computer Engineering, West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100326592","display_name":"Yuan Zhang","orcid":"https://orcid.org/0000-0003-2726-2855"},"institutions":[{"id":"https://openalex.org/I34949971","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26","country_code":"CN","type":"education","lineage":["https://openalex.org/I34949971"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Zhang","raw_affiliation_strings":["Shandong Provincial Key Laboratory of Network Based Intelligent Computing, University of Jinan, Jinan, China"],"affiliations":[{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Network Based Intelligent Computing, University of Jinan, Jinan, China","institution_ids":["https://openalex.org/I34949971"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100406009"],"corresponding_institution_ids":["https://openalex.org/I148128674","https://openalex.org/I34949971"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.0103,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.75056633,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":null,"first_page":"15893","last_page":"15900"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.685443639755249},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5961998701095581},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5655288696289062},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5376376509666443},{"id":"https://openalex.org/keywords/crossover","display_name":"Crossover","score":0.4764947295188904},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47371166944503784},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3764263391494751},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2801389992237091},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16685950756072998},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16235148906707764}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.685443639755249},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5961998701095581},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5655288696289062},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5376376509666443},{"id":"https://openalex.org/C122507166","wikidata":"https://www.wikidata.org/wiki/Q628906","display_name":"Crossover","level":2,"score":0.4764947295188904},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47371166944503784},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3764263391494751},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2801389992237091},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16685950756072998},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16235148906707764},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2017.2690664","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2017.2690664","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:researchrepository.wvu.edu:faculty_publications-2891","is_oa":false,"landing_page_url":"https://researchrepository.wvu.edu/faculty_publications/1985","pdf_url":null,"source":{"id":"https://openalex.org/S4306402612","display_name":"The Research Repository @ WVU (West Virginia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12097938","host_organization_name":"West Virginia University","host_organization_lineage":["https://openalex.org/I12097938"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty & Staff Scholarship","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:c296adf6791340cdb401cee523371d78","is_oa":true,"landing_page_url":"https://doaj.org/article/c296adf6791340cdb401cee523371d78","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 5, Pp 15893-15900 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2017.2690664","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2017.2690664","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4189738921","display_name":null,"funder_award_id":"XKY1638","funder_id":"https://openalex.org/F4320322291","funder_display_name":"University of Jinan"},{"id":"https://openalex.org/G8696073526","display_name":null,"funder_award_id":"61572231","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322291","display_name":"University of Jinan","ror":"https://ror.org/02mjz6f26"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1529046634","https://openalex.org/W1771060896","https://openalex.org/W1908543963","https://openalex.org/W1918164078","https://openalex.org/W1965479796","https://openalex.org/W1970350442","https://openalex.org/W2008620264","https://openalex.org/W2016279534","https://openalex.org/W2020077417","https://openalex.org/W2029158589","https://openalex.org/W2048451896","https://openalex.org/W2057693235","https://openalex.org/W2063639254","https://openalex.org/W2068711037","https://openalex.org/W2074443723","https://openalex.org/W2074759400","https://openalex.org/W2079668303","https://openalex.org/W2081306806","https://openalex.org/W2084668512","https://openalex.org/W2102562836","https://openalex.org/W2107938158","https://openalex.org/W2111708605","https://openalex.org/W2113019448","https://openalex.org/W2113782798","https://openalex.org/W2131984349","https://openalex.org/W2149367002","https://openalex.org/W2150681269","https://openalex.org/W2155606054","https://openalex.org/W2169526870","https://openalex.org/W3143610562"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W15348386","https://openalex.org/W2314128295","https://openalex.org/W1509942269","https://openalex.org/W4287026692","https://openalex.org/W2077895977","https://openalex.org/W2609388058","https://openalex.org/W2132274001"],"abstract_inverted_index":{"With":[0],"the":[1,18,45,99,120,125,132,152,157,160,180,205],"development":[2],"of":[3,48,85,101,112,127,146,174,179],"high-throughput":[4],"interaction":[5],"detection":[6],"techniques":[7,73],"such":[8],"as":[9],"tandem":[10],"affinity":[11],"purification":[12],"(TAP)":[13],"and":[14,34,74,83,104,151,186],"yeast":[15,117,188],"two-hybrid":[16],"(Y2H),":[17],"available":[19],"genome-wide":[20],"protein-protein":[21],"interactions":[22],"(PPIs)":[23],"data":[24,185],"have":[25],"been":[26],"increasing":[27],"in":[28,39,109,194],"recent":[29],"years.":[30],"Using":[31],"mathematical,":[32],"physical,":[33],"artificial-intelligence":[35],"methods,":[36],"some":[37],"researchers":[38],"computational":[40],"biology":[41],"focused":[42],"on":[43],"uncovering":[44],"evolutionary":[46],"ages":[47],"proteins":[49,86],"according":[50],"to":[51,80,97,183],"present":[52],"PPI":[53],"networks":[54],"(PINs),":[55],"but":[56],"improving":[57],"their":[58,88],"accuracy":[59,100],"was":[60],"challenging.":[61],"A":[62],"plausible":[63],"explanation":[64],"is":[65],"that":[66,200],"they":[67],"solved":[68],"biological":[69,81,107,166],"problems":[70],"with":[71],"non-biological":[72,202],"did":[75],"not":[76],"provide":[77],"much":[78],"attention":[79],"backgrounds":[82],"meanings":[84],"or":[87],"relationships.":[89],"In":[90],"this":[91],"paper,":[92],"we":[93,123],"propose":[94],"two":[95],"ways":[96],"improve":[98],"age":[102],"predicting":[103],"skillfully":[105],"\u201cembedding\u201dmultisource":[106],"information":[108,167],"each":[110],"iteration":[111],"an":[113],"archaeology":[114],"algorithm":[115,182],"for":[116],"PIN.":[118],"On":[119,156],"one":[121],"hand,":[122,159],"reduce":[124],"probability":[126],"reversing":[128],"errors":[129,173],"by":[130,144],"decreasing":[131],"non-duplication":[133],"protein":[134],"pairs,":[135],"which":[136],"are":[137],"obtained":[138],"from":[139,164],"460":[140],"gene":[141],"trees":[142],"constructed":[143],"means":[145],"a":[147,191],"multiple":[148],"sequence":[149],"alignment":[150],"neighbor":[153],"joining":[154],"algorithm.":[155],"other":[158],"reliable":[161],"crossover":[162],"standard":[163],"different":[165],"sources":[168],"can":[169],"decrease":[170],"local":[171],"random":[172],"alternative":[175],"treatment.":[176],"The":[177],"application":[178],"novel":[181],"simulation":[184],"real":[187],"PINs":[189],"shows":[190],"marked":[192],"improvement":[193],"accuracy.":[195],"Our":[196],"research":[197],"strongly":[198],"suggests":[199],"putting":[201],"methods":[203],"into":[204],"\u201cbiological":[206],"context\u201dwill":[207],"bear":[208],"more":[209],"favorable":[210],"results.":[211]},"counts_by_year":[{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
