{"id":"https://openalex.org/W2118422221","doi":"https://doi.org/10.1109/acc.2007.4282770","title":"Controlling biological systems: the lactose regulation system of Escherichia coli","display_name":"Controlling biological systems: the lactose regulation system of Escherichia coli","publication_year":2007,"publication_date":"2007-07-01","ids":{"openalex":"https://openalex.org/W2118422221","doi":"https://doi.org/10.1109/acc.2007.4282770","mag":"2118422221"},"language":"en","primary_location":{"id":"doi:10.1109/acc.2007.4282770","is_oa":false,"landing_page_url":"https://doi.org/10.1109/acc.2007.4282770","pdf_url":null,"source":{"id":"https://openalex.org/S4210168941","display_name":"Proceedings of the ... American Control Conference/Proceedings of the American Control Conference","issn_l":"0743-1619","issn":["0743-1619","2378-5861"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 American Control Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://repository.upenn.edu/bitstreams/f281f446-d4ef-4317-86a4-37948d0d3f10/download","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029921181","display_name":"A. Agung Julius","orcid":"https://orcid.org/0000-0002-0970-3226"},"institutions":[{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. Agung Julius","raw_affiliation_strings":["GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","University of Pennsylvania , Philadelphia"],"affiliations":[{"raw_affiliation_string":"GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"University of Pennsylvania , Philadelphia","institution_ids":["https://openalex.org/I922845939","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087387014","display_name":"\u00c1d\u00e1m Hal\u00e1sz","orcid":"https://orcid.org/0000-0001-5401-000X"},"institutions":[{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Halasz","raw_affiliation_strings":["GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","University of Pennsylvania , Philadelphia"],"affiliations":[{"raw_affiliation_string":"GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"University of Pennsylvania , Philadelphia","institution_ids":["https://openalex.org/I922845939","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087021192","display_name":"Vijay Kumar","orcid":"https://orcid.org/0000-0002-3902-9391"},"institutions":[{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vijay Kumar","raw_affiliation_strings":["GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","University of Pennsylvania , Philadelphia"],"affiliations":[{"raw_affiliation_string":"GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"University of Pennsylvania , Philadelphia","institution_ids":["https://openalex.org/I922845939","https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029243115","display_name":"George J. Pappas","orcid":"https://orcid.org/0000-0001-9081-0637"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George J. Pappas","raw_affiliation_strings":["GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","University of Pennsylvania , Philadelphia"],"affiliations":[{"raw_affiliation_string":"GRASP Laboratory, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"University of Pennsylvania , Philadelphia","institution_ids":["https://openalex.org/I922845939","https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5029921181"],"corresponding_institution_ids":["https://openalex.org/I79576946","https://openalex.org/I922845939"],"apc_list":null,"apc_paid":null,"fwci":6.019,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.97862233,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":null,"biblio":{"volume":"403","issue":null,"first_page":"1305","last_page":"1310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.7185145616531372},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.7042953968048096},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.614986002445221},{"id":"https://openalex.org/keywords/controller","display_name":"Controller (irrigation)","score":0.569200336933136},{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.46578043699264526},{"id":"https://openalex.org/keywords/control-engineering","display_name":"Control engineering","score":0.46385738253593445},{"id":"https://openalex.org/keywords/control-theory","display_name":"Control theory (sociology)","score":0.4590531587600708},{"id":"https://openalex.org/keywords/stochastic-modelling","display_name":"Stochastic modelling","score":0.45082494616508484},{"id":"https://openalex.org/keywords/markov-process","display_name":"Markov process","score":0.449769526720047},{"id":"https://openalex.org/keywords/continuous-time-markov-chain","display_name":"Continuous-time Markov chain","score":0.4453132748603821},{"id":"https://openalex.org/keywords/markov-model","display_name":"Markov model","score":0.38349249958992004},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.34956201910972595},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.28025150299072266},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.23241102695465088},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2080059051513672},{"id":"https://openalex.org/keywords/variable-order-markov-model","display_name":"Variable-order Markov model","score":0.18167060613632202},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1733674705028534},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1732671558856964},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.14147472381591797}],"concepts":[{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.7185145616531372},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.7042953968048096},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.614986002445221},{"id":"https://openalex.org/C203479927","wikidata":"https://www.wikidata.org/wiki/Q5165939","display_name":"Controller (irrigation)","level":2,"score":0.569200336933136},{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.46578043699264526},{"id":"https://openalex.org/C133731056","wikidata":"https://www.wikidata.org/wiki/Q4917288","display_name":"Control engineering","level":1,"score":0.46385738253593445},{"id":"https://openalex.org/C47446073","wikidata":"https://www.wikidata.org/wiki/Q5165890","display_name":"Control theory (sociology)","level":3,"score":0.4590531587600708},{"id":"https://openalex.org/C127491075","wikidata":"https://www.wikidata.org/wiki/Q7617825","display_name":"Stochastic modelling","level":2,"score":0.45082494616508484},{"id":"https://openalex.org/C159886148","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov process","level":2,"score":0.449769526720047},{"id":"https://openalex.org/C147080032","wikidata":"https://www.wikidata.org/wiki/Q176720","display_name":"Continuous-time Markov chain","level":5,"score":0.4453132748603821},{"id":"https://openalex.org/C163836022","wikidata":"https://www.wikidata.org/wiki/Q6771326","display_name":"Markov model","level":3,"score":0.38349249958992004},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.34956201910972595},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.28025150299072266},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.23241102695465088},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2080059051513672},{"id":"https://openalex.org/C54907487","wikidata":"https://www.wikidata.org/wiki/Q7915688","display_name":"Variable-order Markov model","level":4,"score":0.18167060613632202},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1733674705028534},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1732671558856964},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.14147472381591797},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/acc.2007.4282770","is_oa":false,"landing_page_url":"https://doi.org/10.1109/acc.2007.4282770","pdf_url":null,"source":{"id":"https://openalex.org/S4210168941","display_name":"Proceedings of the ... American Control Conference/Proceedings of the American Control Conference","issn_l":"0743-1619","issn":["0743-1619","2378-5861"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 American Control Conference","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.upenn.edu:meam_papers-1243","is_oa":true,"landing_page_url":"https://repository.upenn.edu/meam_papers/233","pdf_url":"https://repository.upenn.edu/bitstreams/f281f446-d4ef-4317-86a4-37948d0d3f10/download","source":{"id":"https://openalex.org/S4377196331","display_name":"Scholarly Commons (University of Pennsylvania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79576946","host_organization_name":"University of Pennsylvania","host_organization_lineage":["https://openalex.org/I79576946"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Departmental Papers (MEAM)","raw_type":"text"},{"id":"pmh:oai:repository.upenn.edu:20.500.14332/39951","is_oa":false,"landing_page_url":"https://repository.upenn.edu/handle/20.500.14332/39951","pdf_url":null,"source":{"id":"https://openalex.org/S4306402083","display_name":"ScholarlyCommons (University of Pennsylvania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79576946","host_organization_name":"University of Pennsylvania","host_organization_lineage":["https://openalex.org/I79576946"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"published","raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:repository.upenn.edu:meam_papers-1243","is_oa":true,"landing_page_url":"https://repository.upenn.edu/meam_papers/233","pdf_url":"https://repository.upenn.edu/bitstreams/f281f446-d4ef-4317-86a4-37948d0d3f10/download","source":{"id":"https://openalex.org/S4377196331","display_name":"Scholarly Commons (University of Pennsylvania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79576946","host_organization_name":"University of Pennsylvania","host_organization_lineage":["https://openalex.org/I79576946"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Departmental Papers (MEAM)","raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6700000166893005,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118422221.pdf","grobid_xml":"https://content.openalex.org/works/W2118422221.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W165094905","https://openalex.org/W1532504064","https://openalex.org/W1534052968","https://openalex.org/W1556814728","https://openalex.org/W1587663028","https://openalex.org/W1604198655","https://openalex.org/W1606538099","https://openalex.org/W1890293238","https://openalex.org/W1963906834","https://openalex.org/W1974272479","https://openalex.org/W1978017495","https://openalex.org/W1988791304","https://openalex.org/W1993826279","https://openalex.org/W1997151560","https://openalex.org/W2004575876","https://openalex.org/W2004801113","https://openalex.org/W2009103787","https://openalex.org/W2023403198","https://openalex.org/W2024882852","https://openalex.org/W2028631892","https://openalex.org/W2032622933","https://openalex.org/W2042321087","https://openalex.org/W2043487490","https://openalex.org/W2064483836","https://openalex.org/W2066416578","https://openalex.org/W2084924279","https://openalex.org/W2086730285","https://openalex.org/W2098412029","https://openalex.org/W2103029515","https://openalex.org/W2107342968","https://openalex.org/W2108419658","https://openalex.org/W2111167674","https://openalex.org/W2118422221","https://openalex.org/W2120112078","https://openalex.org/W2123097315","https://openalex.org/W2125984126","https://openalex.org/W2128082514","https://openalex.org/W2130652856","https://openalex.org/W2134759932","https://openalex.org/W2135669464","https://openalex.org/W2139374901","https://openalex.org/W2141170384","https://openalex.org/W2144588155","https://openalex.org/W2148323109","https://openalex.org/W2149202606","https://openalex.org/W2167746224","https://openalex.org/W2171042116","https://openalex.org/W2171280873","https://openalex.org/W4297744580","https://openalex.org/W6677816295","https://openalex.org/W6680190406"],"related_works":["https://openalex.org/W2987631717","https://openalex.org/W2009895812","https://openalex.org/W2410777413","https://openalex.org/W2500682103","https://openalex.org/W2119686276","https://openalex.org/W2146188408","https://openalex.org/W2734551807","https://openalex.org/W2084326697","https://openalex.org/W2994944459","https://openalex.org/W4366399511"],"abstract_inverted_index":{"In":[0],"this":[1],"paper":[2,22,102],"we":[3],"present":[4,48],"a":[5,14,49,87,91,107,116,120],"comprehensive":[6],"framework":[7],"for":[8,13,106],"abstraction":[9,27],"and":[10,25,128,151],"controller":[11,104,140],"design":[12,105,141],"biological":[15],"system.":[16,30],"The":[17,97,110],"first":[18],"half":[19,99],"of":[20,28,53,58,100,113,115,122,130],"the":[21,29,44,54,78,101,146,154,158],"concerns":[23],"modeling":[24],"model":[26,52,82,150,156],"Most":[31],"models":[32,38],"in":[33,43,119],"systems":[34],"biology":[35],"are":[36],"deterministic":[37,72],"with":[39],"ordinary":[40],"differential":[41],"equations":[42],"concentration":[45],"variables.":[46],"We":[47,74,137],"stochastic":[50,80],"hybrid":[51,81],"lactose":[55],"regulation":[56],"system":[57],"E.":[59],"coli":[60],"bacteria":[61,123],"that":[62,77,139],"capture":[63],"important":[64],"phenomena":[65],"which":[66],"cannot":[67],"be":[68,84,143],"described":[69],"by":[70],"continuous":[71,93],"models.":[73],"then":[75],"show":[76,138],"resulting":[79],"can":[83,142],"abstracted":[85,147],"into":[86],"much":[88],"simpler":[89],"model,":[90],"two-state":[92],"time":[94],"Markov":[95],"chain.":[96],"second":[98],"discusses":[103],"specific":[108],"architecture.":[109],"architecture":[111],"consists":[112],"measurement":[114],"global":[117,131],"quantity":[118],"colony":[121],"as":[124,134],"an":[125],"output":[126],"feedback,":[127],"manipulation":[129],"environmental":[132],"variables":[133],"control":[135],"actuation.":[136],"performed":[144],"on":[145,153],"(Markov":[148],"chain)":[149],"implementation":[152],"real":[155],"yields":[157],"desired":[159],"result.":[160]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
