{"id":"https://openalex.org/W2548877033","doi":"https://doi.org/10.1109/3dvis.2014.7160101","title":"On the use of 1D, 2D, and 3D visualisation for molecular graphics","display_name":"On the use of 1D, 2D, and 3D visualisation for molecular graphics","publication_year":2014,"publication_date":"2014-11-01","ids":{"openalex":"https://openalex.org/W2548877033","doi":"https://doi.org/10.1109/3dvis.2014.7160101","mag":"2548877033"},"language":"en","primary_location":{"id":"doi:10.1109/3dvis.2014.7160101","is_oa":false,"landing_page_url":"https://doi.org/10.1109/3dvis.2014.7160101","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE VIS International Workshop on 3DVis (3DVis)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102872139","display_name":"Julian Heinrich","orcid":"https://orcid.org/0000-0002-5353-3914"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Julian Heinrich","raw_affiliation_strings":["CSIRO"],"affiliations":[{"raw_affiliation_string":"CSIRO","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016295654","display_name":"Michael Burch","orcid":"https://orcid.org/0000-0003-4756-5335"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Burch","raw_affiliation_strings":["Visualization Research Institute"],"affiliations":[{"raw_affiliation_string":"Visualization Research Institute","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061545147","display_name":"S\u00e9an O\u2019Donoghue","orcid":"https://orcid.org/0000-0001-9520-6623"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sean I. O'Donoghue","raw_affiliation_strings":["CSIRO Garvan Institute of Medical Research"],"affiliations":[{"raw_affiliation_string":"CSIRO Garvan Institute of Medical Research","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I1292875679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102872139"],"corresponding_institution_ids":["https://openalex.org/I1292875679"],"apc_list":null,"apc_paid":null,"fwci":0.4878,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.7279776,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"13","issue":null,"first_page":"55","last_page":"60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9670000076293945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7638276815414429},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6228294968605042},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6046323776245117},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5491686463356018},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.5277811884880066},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.52297043800354},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5221148729324341},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.44983938336372375},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4315916895866394},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21393105387687683},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.09482002258300781}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7638276815414429},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6228294968605042},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6046323776245117},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5491686463356018},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.5277811884880066},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.52297043800354},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5221148729324341},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.44983938336372375},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4315916895866394},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21393105387687683},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.09482002258300781},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/3dvis.2014.7160101","is_oa":false,"landing_page_url":"https://doi.org/10.1109/3dvis.2014.7160101","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE VIS International Workshop on 3DVis (3DVis)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320386","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1500047064","https://openalex.org/W1519267917","https://openalex.org/W1533371356","https://openalex.org/W1599511619","https://openalex.org/W1965112674","https://openalex.org/W1978795084","https://openalex.org/W1984695931","https://openalex.org/W1994637805","https://openalex.org/W2010861052","https://openalex.org/W2029667189","https://openalex.org/W2037652283","https://openalex.org/W2043212464","https://openalex.org/W2047257058","https://openalex.org/W2052150953","https://openalex.org/W2074473216","https://openalex.org/W2081912151","https://openalex.org/W2106480295","https://openalex.org/W2115977463","https://openalex.org/W2116194516","https://openalex.org/W2120772351","https://openalex.org/W2122993881","https://openalex.org/W2126466006","https://openalex.org/W2130479394","https://openalex.org/W2132629607","https://openalex.org/W2134794636","https://openalex.org/W2135034398","https://openalex.org/W2135962591","https://openalex.org/W2143203329","https://openalex.org/W2145224858","https://openalex.org/W2150085383","https://openalex.org/W2152069640","https://openalex.org/W2161133721","https://openalex.org/W2168332319","https://openalex.org/W2170309361","https://openalex.org/W2221199756","https://openalex.org/W6630866687"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W1980956817","https://openalex.org/W2542318691"],"abstract_inverted_index":{"Macromolecular":[0],"structures":[1,114],"have":[2,54],"become":[3],"easily":[4],"accessible":[5],"by":[6,152],"means":[7,153],"of":[8,27,41,86,104,136,142,154],"large":[9],"databases,":[10],"for":[11,33],"example":[12],"the":[13,45,132,140],"World":[14],"Wide":[15],"Protein":[16],"Data":[17],"Bank.":[18],"Several":[19],"years":[20],"ago,":[21],"existing":[22],"data":[23],"in":[24,139],"this":[25,87],"field":[26],"research":[28],"was":[29],"rare":[30],"and":[31,35,52,57,81,95,115,120,134,145],"demanded":[32],"specialists":[34],"experts":[36],"which":[37],"wasted":[38],"a":[39],"lot":[40],"time":[42],"to":[43,59,90,101,127,148],"explore":[44],"data.":[46],"Today,":[47],"various":[48],"visualisation":[49],"techniques,":[50],"tools,":[51],"systems":[53],"been":[55],"designed":[56],"developed":[58],"support":[60],"biochemists,":[61],"chemists,":[62],"or":[63,77],"molecular":[64,113],"biologists":[65],"at":[66],"certain":[67],"tasks":[68,110,144],"such":[69],"as":[70],"analysing":[71],"protein":[72],"functions,":[73],"exploring":[74],"ligand-binding":[75],"sites,":[76],"understanding":[78],"RNA":[79],"signal":[80],"message":[82],"processing.":[83],"The":[84],"intent":[85],"paper":[88],"is":[89],"discuss":[91,131],"how":[92,117],"1D,":[93,118],"2D,":[94,119],"3D":[96,121],"representations":[97],"are":[98,123],"typically":[99],"employed":[100],"facilitate":[102],"some":[103],"these":[105,137,143],"tasks.":[106],"We":[107,130],"describe":[108],"common":[109],"that":[111],"involve":[112],"illustrate":[116],"visualisations":[122],"currently":[124],"being":[125],"used":[126],"address":[128],"these.":[129],"benefits":[133],"drawbacks":[135],"concepts":[138],"context":[141],"propose":[146],"methods":[147],"provide":[149],"empirical":[150],"evidence":[151],"user":[155],"evaluations.":[156]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
