{"id":"https://openalex.org/W2067620072","doi":"https://doi.org/10.1108/03684921011046825","title":"A predicting algorithm of RNA secondary structure based on stems","display_name":"A predicting algorithm of RNA secondary structure based on stems","publication_year":2010,"publication_date":"2010-06-15","ids":{"openalex":"https://openalex.org/W2067620072","doi":"https://doi.org/10.1108/03684921011046825","mag":"2067620072"},"language":"en","primary_location":{"id":"doi:10.1108/03684921011046825","is_oa":false,"landing_page_url":"https://doi.org/10.1108/03684921011046825","pdf_url":null,"source":{"id":"https://openalex.org/S168682784","display_name":"Kybernetes","issn_l":"0368-492X","issn":["0368-492X","1758-7883"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319811","host_organization_name":"Emerald Publishing Limited","host_organization_lineage":["https://openalex.org/P4310319811"],"host_organization_lineage_names":["Emerald Publishing Limited"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kybernetes","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102002957","display_name":"Zhendong Liu","orcid":"https://orcid.org/0000-0002-4131-313X"},"institutions":[{"id":"https://openalex.org/I44445938","display_name":"Shandong Jianzhu University","ror":"https://ror.org/01gbfax37","country_code":"CN","type":"education","lineage":["https://openalex.org/I44445938"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhendong Liu","raw_affiliation_strings":["Department of Computer Science and Technology, Shandong Jianzhu University, Jinan, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Shandong Jianzhu University, Jinan, China","institution_ids":["https://openalex.org/I44445938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091213605","display_name":"Hengwu Li","orcid":null},"institutions":[{"id":"https://openalex.org/I59483232","display_name":"Shandong University of Finance and Economics","ror":"https://ror.org/02e2nnq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I59483232"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hengwu Li","raw_affiliation_strings":["Department of Computer Science and Technology, Shandong Economic University, Jinan, China","(Department of Computer Science and Technology, Shandong Economic University, Jinan, China)"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Shandong Economic University, Jinan, China","institution_ids":["https://openalex.org/I59483232"]},{"raw_affiliation_string":"(Department of Computer Science and Technology, Shandong Economic University, Jinan, China)","institution_ids":["https://openalex.org/I59483232"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101769221","display_name":"Daming Zhu","orcid":"https://orcid.org/0000-0001-9395-7247"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Daming Zhu","raw_affiliation_strings":["Department of Computer Science and Technology, Shandong University, Jinan, China","[Department of Computer Science and Technology, Shandong University, Jinan, China]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I80143920"]},{"raw_affiliation_string":"[Department of Computer Science and Technology, Shandong University, Jinan, China]","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102002957"],"corresponding_institution_ids":["https://openalex.org/I44445938"],"apc_list":null,"apc_paid":null,"fwci":1.3933,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.79755278,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"39","issue":"6","first_page":"1050","last_page":"1057"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.7375977039337158},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.6956155300140381},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5991365909576416},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.5990241169929504},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5189768671989441},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.49647098779678345},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.4716548025608063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06857803463935852}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.7375977039337158},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.6956155300140381},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5991365909576416},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5990241169929504},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5189768671989441},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.49647098779678345},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.4716548025608063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06857803463935852},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1108/03684921011046825","is_oa":false,"landing_page_url":"https://doi.org/10.1108/03684921011046825","pdf_url":null,"source":{"id":"https://openalex.org/S168682784","display_name":"Kybernetes","issn_l":"0368-492X","issn":["0368-492X","1758-7883"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319811","host_organization_name":"Emerald Publishing Limited","host_organization_lineage":["https://openalex.org/P4310319811"],"host_organization_lineage_names":["Emerald Publishing Limited"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kybernetes","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1995403172","https://openalex.org/W2000191287","https://openalex.org/W2014989101","https://openalex.org/W2028574527","https://openalex.org/W2106293441","https://openalex.org/W2123241418","https://openalex.org/W2124162379"],"related_works":["https://openalex.org/W2558432341","https://openalex.org/W1975806245","https://openalex.org/W3047450301","https://openalex.org/W2345156963","https://openalex.org/W1971402940","https://openalex.org/W2919479895","https://openalex.org/W2131054067","https://openalex.org/W3196523453","https://openalex.org/W2021868453","https://openalex.org/W2791545870"],"abstract_inverted_index":{"Purpose":[0],"The":[1,30,54,109,122,137],"purpose":[2],"of":[3],"this":[4],"paper":[5,123],"is":[6,40,72,90,100,118],"to":[7,11,43,74,92,102],"design":[8],"an":[9],"algorithm":[10,33,71,99,139,154],"predict":[12,44,61,75,103],"RNA":[13,46,56,63,77,104,113,133],"secondary":[14,47,57,64,78,105,114,134],"structure,":[15],"compared":[16],"with":[17],"other":[18],"relevant":[19],"algorithm,":[20],"its":[21],"time":[22,36,144],"complexity":[23,26],"and":[24,37,127,145,158],"space":[25],"are":[27],"reduced.":[28],"Design/methodology/approach":[29],"dynamic":[31],"programming":[32],"need":[34],"more":[35,51],"space;":[38,147],"it":[39],"very":[41],"difficult":[42],"the":[45,62,69,76,85,94,132,148,153],"structure":[48,58,65,79,115],"which":[49],"have":[50],"1,000":[52],"bases.":[53],"nested":[55],"algorithms":[59],"cannot":[60],"containing":[66,80],"pseudoknots,":[67],"so":[68],"fast":[70],"needed":[73],"pseudoknots":[81,117],"urgently.":[82],"Based":[83],"on":[84],"greedy":[86,98],"principle,":[87],"a":[88,125],"model":[89],"designed":[91],"solve":[93],"problem.":[95],"Findings":[96],"A":[97],"presented":[101],"structure.":[106,135],"Research":[107],"limitations/implications":[108],"problem":[110],"for":[111,130],"predicting":[112,131],"including":[116],"NP\u2010complete.":[119],"Practical":[120],"implications":[121],"presents":[124],"valuable":[126],"useful":[128],"method":[129],"Originality/value":[136],"new":[138],"needs":[140],"O(n":[141],"3":[142],")":[143],"O(n)":[146],"experimental":[149],"results":[150],"indicate":[151],"that":[152],"has":[155],"good":[156],"accuracy":[157],"sensitivity.":[159]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
