{"id":"https://openalex.org/W2979330275","doi":"https://doi.org/10.1093/nar/gkz874","title":"VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium","display_name":"VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium","publication_year":2019,"publication_date":"2019-09-30","ids":{"openalex":"https://openalex.org/W2979330275","doi":"https://doi.org/10.1093/nar/gkz874","mag":"2979330275","pmid":"https://pubmed.ncbi.nlm.nih.gov/31588507"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz874","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz874","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1057/31697966/gkz874.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1057/31697966/gkz874.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080299484","display_name":"Dmitry Bagaev","orcid":"https://orcid.org/0000-0001-9655-7986"},"institutions":[{"id":"https://openalex.org/I337778094","display_name":"Pirogov Russian National Research Medical University","ror":"https://ror.org/018159086","country_code":"RU","type":"education","lineage":["https://openalex.org/I337778094","https://openalex.org/I4210117042"]},{"id":"https://openalex.org/I4210105571","display_name":"Institute of Bioorganic Chemistry","ror":"https://ror.org/01dg04253","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210105571","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Dmitry V Bagaev","raw_affiliation_strings":["Pirogov Russian Medical State University, Moscow, Russia","Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Pirogov Russian Medical State University, Moscow, Russia","institution_ids":["https://openalex.org/I337778094"]},{"raw_affiliation_string":"Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia","institution_ids":["https://openalex.org/I4210105571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078220806","display_name":"Renske M. A. Vroomans","orcid":"https://orcid.org/0000-0002-1353-797X"},"institutions":[{"id":"https://openalex.org/I4210109447","display_name":"Dialyse Centrum Groningen","ror":"https://ror.org/022nxqs47","country_code":"NL","type":"other","lineage":["https://openalex.org/I4210109447"]},{"id":"https://openalex.org/I55027601","display_name":"Netherlands Institute for Advanced Study in the Humanities and Social Sciences","ror":"https://ror.org/04z3wz653","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1322597698","https://openalex.org/I55027601"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Renske M A Vroomans","raw_affiliation_strings":["Institute for Advanced Study, University of Amsterdam, Amsterdam, The Netherlands","Origins Center, Groningen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Study, University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I55027601","https://openalex.org/I887064364"]},{"raw_affiliation_string":"Origins Center, Groningen, The Netherlands","institution_ids":["https://openalex.org/I4210109447"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043177895","display_name":"Jerome Samir","orcid":"https://orcid.org/0000-0001-6557-9373"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jerome Samir","raw_affiliation_strings":["Kirby Institute for Infection and Immunity, UNSW Sydney, Sydney, Australia","School of Medical Sciences, UNSW Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Kirby Institute for Infection and Immunity, UNSW Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"School of Medical Sciences, UNSW Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016218153","display_name":"Ulrik Stervbo","orcid":"https://orcid.org/0000-0002-2831-8868"},"institutions":[{"id":"https://openalex.org/I4210088550","display_name":"Universit\u00e4tsklinik Marien Hospital Herne","ror":"https://ror.org/004h6mc53","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799784675","https://openalex.org/I4210088550"]},{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]},{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulrik Stervbo","raw_affiliation_strings":["Center for Translational Medicine, Medical Department I, Marien Hospital Herne, University Hospital of the Ruhr-University Bochum, Herne, Germany","Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Corporate Member of Freie Universit\u00e4t Berlin, Humboldt-Universit\u00e4t zu Berlin, and Berlin Institute of Health, Berlin-Brandenburg Center for Regenerative Therapies, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Translational Medicine, Medical Department I, Marien Hospital Herne, University Hospital of the Ruhr-University Bochum, Herne, Germany","institution_ids":["https://openalex.org/I4210088550","https://openalex.org/I904495901"]},{"raw_affiliation_string":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Corporate Member of Freie Universit\u00e4t Berlin, Humboldt-Universit\u00e4t zu Berlin, and Berlin Institute of Health, Berlin-Brandenburg Center for Regenerative Therapies, Berlin, Germany","institution_ids":["https://openalex.org/I4210139777","https://openalex.org/I39343248","https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103272298","display_name":"Cristina Rius","orcid":"https://orcid.org/0000-0002-1896-1649"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Cristina Rius","raw_affiliation_strings":["Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK"],"affiliations":[{"raw_affiliation_string":"Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057188909","display_name":"Garry Dolton","orcid":"https://orcid.org/0000-0002-6332-9108"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Garry Dolton","raw_affiliation_strings":["Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK"],"affiliations":[{"raw_affiliation_string":"Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033711307","display_name":"Alexander Greenshields\u2010Watson","orcid":"https://orcid.org/0000-0002-8740-9823"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander Greenshields-Watson","raw_affiliation_strings":["Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK"],"affiliations":[{"raw_affiliation_string":"Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070905694","display_name":"Meriem Attaf","orcid":null},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Meriem Attaf","raw_affiliation_strings":["Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK"],"affiliations":[{"raw_affiliation_string":"Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061222540","display_name":"Evgeny S. Egorov","orcid":"https://orcid.org/0000-0002-6495-7173"},"institutions":[{"id":"https://openalex.org/I4210105571","display_name":"Institute of Bioorganic Chemistry","ror":"https://ror.org/01dg04253","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210105571","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Evgeny S Egorov","raw_affiliation_strings":["Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia","institution_ids":["https://openalex.org/I4210105571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057434715","display_name":"Ivan V. Zvyagin","orcid":"https://orcid.org/0000-0002-1769-9116"},"institutions":[{"id":"https://openalex.org/I337778094","display_name":"Pirogov Russian National Research Medical University","ror":"https://ror.org/018159086","country_code":"RU","type":"education","lineage":["https://openalex.org/I337778094","https://openalex.org/I4210117042"]},{"id":"https://openalex.org/I4210105571","display_name":"Institute of Bioorganic Chemistry","ror":"https://ror.org/01dg04253","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210105571","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ivan V Zvyagin","raw_affiliation_strings":["Pirogov Russian Medical State University, Moscow, Russia","Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Pirogov Russian Medical State University, Moscow, Russia","institution_ids":["https://openalex.org/I337778094"]},{"raw_affiliation_string":"Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia","institution_ids":["https://openalex.org/I4210105571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037283048","display_name":"Nina Babel","orcid":"https://orcid.org/0000-0003-3673-712X"},"institutions":[{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]},{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210088550","display_name":"Universit\u00e4tsklinik Marien Hospital Herne","ror":"https://ror.org/004h6mc53","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799784675","https://openalex.org/I4210088550"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nina Babel","raw_affiliation_strings":["Center for Translational Medicine, Medical Department I, Marien Hospital Herne, University Hospital of the Ruhr-University Bochum, Herne, Germany","Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Corporate Member of Freie Universit\u00e4t Berlin, Humboldt-Universit\u00e4t zu Berlin, and Berlin Institute of Health, Berlin-Brandenburg Center for Regenerative Therapies, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Translational Medicine, Medical Department I, Marien Hospital Herne, University Hospital of the Ruhr-University Bochum, Herne, Germany","institution_ids":["https://openalex.org/I4210088550","https://openalex.org/I904495901"]},{"raw_affiliation_string":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Corporate Member of Freie Universit\u00e4t Berlin, Humboldt-Universit\u00e4t zu Berlin, and Berlin Institute of Health, Berlin-Brandenburg Center for Regenerative Therapies, Berlin, Germany","institution_ids":["https://openalex.org/I4210139777","https://openalex.org/I39343248","https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022694581","display_name":"David K. Cole","orcid":"https://orcid.org/0000-0003-0028-9396"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]},{"id":"https://openalex.org/I4210104024","display_name":"Immunocore (United Kingdom)","ror":"https://ror.org/014xzez86","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210104024"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David K Cole","raw_affiliation_strings":["Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","Immunocore Ltd., Abingdon, OX14 4RY, UK"],"affiliations":[{"raw_affiliation_string":"Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I79510175"]},{"raw_affiliation_string":"Immunocore Ltd., Abingdon, OX14 4RY, UK","institution_ids":["https://openalex.org/I4210104024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012262326","display_name":"Andrew Godkin","orcid":"https://orcid.org/0000-0002-1910-7567"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew J Godkin","raw_affiliation_strings":["Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK"],"affiliations":[{"raw_affiliation_string":"Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008376558","display_name":"Andrew K. Sewell","orcid":"https://orcid.org/0000-0003-3194-3135"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew K Sewell","raw_affiliation_strings":["Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK"],"affiliations":[{"raw_affiliation_string":"Division of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073950969","display_name":"Can Ke\u015fmir","orcid":"https://orcid.org/0000-0002-8756-1171"},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Can Kesmir","raw_affiliation_strings":["Theoretical Biology and Bioinformatics Department, Science Faculty, Utrecht University, Utrecht, Netherlands"],"affiliations":[{"raw_affiliation_string":"Theoretical Biology and Bioinformatics Department, Science Faculty, Utrecht University, Utrecht, Netherlands","institution_ids":["https://openalex.org/I193662353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060028352","display_name":"Dmitriy M. Chudakov","orcid":"https://orcid.org/0000-0003-0430-790X"},"institutions":[{"id":"https://openalex.org/I337778094","display_name":"Pirogov Russian National Research Medical University","ror":"https://ror.org/018159086","country_code":"RU","type":"education","lineage":["https://openalex.org/I337778094","https://openalex.org/I4210117042"]},{"id":"https://openalex.org/I125989756","display_name":"Skolkovo Institute of Science and Technology","ror":"https://ror.org/03f9nc143","country_code":"RU","type":"education","lineage":["https://openalex.org/I125989756"]},{"id":"https://openalex.org/I4210105571","display_name":"Institute of Bioorganic Chemistry","ror":"https://ror.org/01dg04253","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210105571","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Dmitriy M Chudakov","raw_affiliation_strings":["Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia","Pirogov Russian Medical State University, Moscow, Russia","Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia","institution_ids":["https://openalex.org/I125989756"]},{"raw_affiliation_string":"Pirogov Russian Medical State University, Moscow, Russia","institution_ids":["https://openalex.org/I337778094"]},{"raw_affiliation_string":"Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia","institution_ids":["https://openalex.org/I4210105571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002886777","display_name":"Fabio Luciani","orcid":"https://orcid.org/0000-0003-0666-6324"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Fabio Luciani","raw_affiliation_strings":["Kirby Institute for Infection and Immunity, UNSW Sydney, Sydney, Australia","School of Medical Sciences, UNSW Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Kirby Institute for Infection and Immunity, UNSW Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"School of Medical Sciences, UNSW Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079193050","display_name":"Mikhail Shugay","orcid":"https://orcid.org/0000-0001-7826-7942"},"institutions":[{"id":"https://openalex.org/I337778094","display_name":"Pirogov Russian National Research Medical University","ror":"https://ror.org/018159086","country_code":"RU","type":"education","lineage":["https://openalex.org/I337778094","https://openalex.org/I4210117042"]},{"id":"https://openalex.org/I125989756","display_name":"Skolkovo Institute of Science and Technology","ror":"https://ror.org/03f9nc143","country_code":"RU","type":"education","lineage":["https://openalex.org/I125989756"]},{"id":"https://openalex.org/I4210105571","display_name":"Institute of Bioorganic Chemistry","ror":"https://ror.org/01dg04253","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210105571","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Mikhail Shugay","raw_affiliation_strings":["Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia","Pirogov Russian Medical State University, Moscow, Russia","Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia","institution_ids":["https://openalex.org/I125989756"]},{"raw_affiliation_string":"Pirogov Russian Medical State University, Moscow, Russia","institution_ids":["https://openalex.org/I337778094"]},{"raw_affiliation_string":"Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia","institution_ids":["https://openalex.org/I4210105571"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":18,"corresponding_author_ids":["https://openalex.org/A5079193050"],"corresponding_institution_ids":["https://openalex.org/I125989756","https://openalex.org/I337778094","https://openalex.org/I4210105571"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":16.8074,"has_fulltext":true,"cited_by_count":428,"citation_normalized_percentile":{"value":0.99474545,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D1057","last_page":"D1062"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.8249326348304749},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7582890391349792},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6201252341270447},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5594666004180908},{"id":"https://openalex.org/keywords/compendium","display_name":"Compendium","score":0.539872407913208},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.497121125459671},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2806810736656189},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25522345304489136},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22321218252182007},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.2216167449951172}],"concepts":[{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.8249326348304749},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7582890391349792},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6201252341270447},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5594666004180908},{"id":"https://openalex.org/C2778473407","wikidata":"https://www.wikidata.org/wiki/Q1459574","display_name":"Compendium","level":2,"score":0.539872407913208},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.497121125459671},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2806810736656189},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25522345304489136},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22321218252182007},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.2216167449951172},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060152","descriptor_name":"V(D)J Recombination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060152","descriptor_name":"V(D)J Recombination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060152","descriptor_name":"V(D)J Recombination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkz874","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz874","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1057/31697966/gkz874.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31588507","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31588507","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:https://orca.cardiff.ac.uk:126624","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401195","display_name":"ORCA Online Research @Cardiff (Cardiff University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79510175","host_organization_name":"Cardiff University","host_organization_lineage":["https://openalex.org/I79510175"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:5903268","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6943061","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:uu:oai:dspace.library.uu.nl:1874/391655","is_oa":true,"landing_page_url":"https://dspace.library.uu.nl/handle/1874/391655","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 48(D1). Oxford University Press","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz874","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz874","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1057/31697966/gkz874.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G7335835600","display_name":null,"funder_award_id":"17-15-01495","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979330275.pdf","grobid_xml":"https://content.openalex.org/works/W2979330275.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2430956829","https://openalex.org/W2507608410","https://openalex.org/W2605177850","https://openalex.org/W2613978126","https://openalex.org/W2752126733","https://openalex.org/W2768618120","https://openalex.org/W2883907411","https://openalex.org/W2888942775","https://openalex.org/W2890742557","https://openalex.org/W2894849296","https://openalex.org/W2898386703","https://openalex.org/W2901096054","https://openalex.org/W2905919132","https://openalex.org/W2912273667","https://openalex.org/W2949975396","https://openalex.org/W2951959160","https://openalex.org/W2970240921","https://openalex.org/W6753174061"],"related_works":["https://openalex.org/W2164288075","https://openalex.org/W2384167225","https://openalex.org/W2113182373","https://openalex.org/W4255195499","https://openalex.org/W2088998312","https://openalex.org/W2119005669","https://openalex.org/W4250965783","https://openalex.org/W2481793228","https://openalex.org/W2403214044","https://openalex.org/W2379604225"],"abstract_inverted_index":{"Here,":[0],"we":[1,107],"report":[2],"an":[3],"update":[4,26],"of":[5,16,49,61,87,113,131,138,144],"the":[6,14,55,59,64,71,136,139,142],"VDJdb":[7,140],"database":[8,31,40,72,150],"with":[9],"a":[10,29,110],"substantial":[11],"increase":[12,57],"in":[13,58,63,141],"number":[15,60],"T-cell":[17,146],"receptor":[18],"(TCR)":[19],"sequences":[20],"and":[21,42,54,127],"their":[22],"cognate":[23],"antigens.":[24],"The":[25,46,149],"further":[27],"provides":[28],"new":[30,78],"infrastructure":[32],"featuring":[33],"two":[34],"additional":[35],"analysis":[36,79],"modes":[37],"that":[38,117],"facilitate":[39],"querying":[41],"real-world":[43],"data":[44],"analysis.":[45],"increased":[47],"yield":[48],"TCR":[50,88,104,115,124],"specificity":[51,125],"identification":[52],"methods":[53,80,102],"overall":[56],"studies":[62],"field":[65],"has":[66],"allowed":[67],"us":[68],"to":[69],"expand":[70],"more":[73],"than":[74],"5-fold.":[75],"Furthermore,":[76],"several":[77],"are":[81],"included.":[82],"For":[83],"example,":[84],"batch":[85],"annotation":[86],"repertoire":[89],"sequencing":[90],"samples":[91],"allows":[92],"for":[93,103,121],"annotating":[94],"large":[95],"datasets":[96],"on-line.":[97],"Using":[98],"recently":[99],"developed":[100],"bioinformatic":[101],"motif":[105],"mining,":[106],"have":[108],"built":[109],"reduced":[111],"set":[112],"high-quality":[114],"motifs":[116],"can":[118],"be":[119],"used":[120],"both":[122],"training":[123],"predictors":[126],"matching":[128],"against":[129],"TCRs":[130],"interest.":[132],"These":[133],"additions":[134],"enhance":[135],"versatility":[137],"task":[143],"exploring":[145],"antigen":[147],"specificities.":[148],"is":[151],"available":[152],"at":[153],"https://vdjdb.cdr3.net.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":70},{"year":2024,"cited_by_count":65},{"year":2023,"cited_by_count":91},{"year":2022,"cited_by_count":81},{"year":2021,"cited_by_count":65},{"year":2020,"cited_by_count":39},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
