{"id":"https://openalex.org/W2223505479","doi":"https://doi.org/10.1093/nar/gkv1238","title":"AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements","display_name":"AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements","publication_year":2015,"publication_date":"2015-11-23","ids":{"openalex":"https://openalex.org/W2223505479","doi":"https://doi.org/10.1093/nar/gkv1238","mag":"2223505479","pmid":"https://pubmed.ncbi.nlm.nih.gov/26602692"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv1238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1238","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D90/16661729/gkv1238.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/44/D1/D90/16661729/gkv1238.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088708809","display_name":"J\u00f6rg Fallmann","orcid":"https://orcid.org/0000-0002-4573-9939"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"J\u00f6rg Fallmann","raw_affiliation_strings":["Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0002-4573-9939","affiliations":[{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052930466","display_name":"Vitaly Sedlyarov","orcid":"https://orcid.org/0000-0002-9872-3535"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Vitaly Sedlyarov","raw_affiliation_strings":["Max F. Perutz Laboratories, University of Vienna, Dr. Bohr-Gasse 9, A-1030 Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0002-9872-3535","affiliations":[{"raw_affiliation_string":"Max F. Perutz Laboratories, University of Vienna, Dr. Bohr-Gasse 9, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081809404","display_name":"Andrea Tanzer","orcid":"https://orcid.org/0000-0003-2873-4236"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Andrea Tanzer","raw_affiliation_strings":["Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria at@tbi.univie.ac.at","Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria at@tbi.univie.ac.at","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001406111","display_name":"Pavel Kovarik","orcid":"https://orcid.org/0000-0003-2956-0944"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I2802916955","display_name":"Max Perutz Labs","ror":"https://ror.org/05cz70a34","country_code":"AT","type":"facility","lineage":["https://openalex.org/I2802916955"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Pavel Kovarik","raw_affiliation_strings":["Max F. Perutz Laboratories, University of Vienna, Dr. Bohr-Gasse 9, A-1030 Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0003-2956-0944","affiliations":[{"raw_affiliation_string":"Max F. Perutz Laboratories, University of Vienna, Dr. Bohr-Gasse 9, A-1030 Vienna, Austria","institution_ids":["https://openalex.org/I2802916955","https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011771355","display_name":"Ivo L. Hofacker","orcid":"https://orcid.org/0000-0001-7132-0800"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT","DK"],"is_corresponding":false,"raw_author_name":"Ivo\u00a0L. Hofacker","raw_affiliation_strings":["Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, W\u00e4hringerstra\u00dfe 29, A-1090 Vienna, Austria Center for non-coding RNA in Technology and Health, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg C, Denmark","Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, W\u00e4hringerstra\u00dfe 29, A-1090 Vienna, Austria","Center for non-coding RNA in Technology and Health, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg C, Denmark","Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0001-7132-0800","affiliations":[{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, W\u00e4hringerstra\u00dfe 29, A-1090 Vienna, Austria Center for non-coding RNA in Technology and Health, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg C, Denmark","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, W\u00e4hringerstra\u00dfe 29, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg C, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17/3, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081809404"],"corresponding_institution_ids":["https://openalex.org/I129774422"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.27,"has_fulltext":false,"cited_by_count":145,"citation_normalized_percentile":{"value":0.9634485,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"44","issue":"D1","first_page":"D90","last_page":"D95"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8560799360275269},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6210330724716187},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.5562856197357178},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.54995197057724},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5221893191337585},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.5083758234977722},{"id":"https://openalex.org/keywords/homo-sapiens","display_name":"Homo sapiens","score":0.5074672102928162},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4857843220233917},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46872103214263916},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4578198194503784},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.44873034954071045},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4293985366821289},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.42847442626953125},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.41323062777519226},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12325027585029602}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8560799360275269},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6210330724716187},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.5562856197357178},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.54995197057724},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5221893191337585},{"id":"https://openalex.org/C2780104201","wikidata":"https://www.wikidata.org/wiki/Q130888","display_name":"Drosophila melanogaster","level":3,"score":0.5083758234977722},{"id":"https://openalex.org/C2777938546","wikidata":"https://www.wikidata.org/wiki/Q5","display_name":"Homo sapiens","level":2,"score":0.5074672102928162},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4857843220233917},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46872103214263916},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4578198194503784},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.44873034954071045},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4293985366821289},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.42847442626953125},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.41323062777519226},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12325027585029602},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkv1238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1238","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D90/16661729/gkv1238.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:26602692","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26602692","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3680791","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4702876","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:info:fedora/oai:univie.ac.at:o:930760","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:930760","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:0305-1048","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:nar:44/D1/D90","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/44/D1/D90","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv1238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1238","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D90/16661729/gkv1238.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2223505479.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W96081152","https://openalex.org/W1578727895","https://openalex.org/W1986884782","https://openalex.org/W1994406092","https://openalex.org/W1997773608","https://openalex.org/W2027424106","https://openalex.org/W2039967316","https://openalex.org/W2053003053","https://openalex.org/W2059051300","https://openalex.org/W2071588844","https://openalex.org/W2080375550","https://openalex.org/W2102619694","https://openalex.org/W2127982146","https://openalex.org/W2129909716","https://openalex.org/W2138590306","https://openalex.org/W2145285946","https://openalex.org/W2148419405","https://openalex.org/W2151203827","https://openalex.org/W2153401206","https://openalex.org/W2156435521","https://openalex.org/W2158953547","https://openalex.org/W2161978970","https://openalex.org/W2323943568","https://openalex.org/W4230266413","https://openalex.org/W6603907867"],"related_works":["https://openalex.org/W4313474347","https://openalex.org/W122800452","https://openalex.org/W2587366952","https://openalex.org/W2993659554","https://openalex.org/W2393920775","https://openalex.org/W3139555495","https://openalex.org/W2103026185","https://openalex.org/W2046677216","https://openalex.org/W279682321","https://openalex.org/W1980411169"],"abstract_inverted_index":{"AREsite2":[0],"represents":[1],"an":[2,6],"update":[3],"for":[4,9,123],"AREsite,":[5],"on-line":[7],"resource":[8],"the":[10,42,84,129],"investigation":[11,31],"of":[12,32,44,70,76],"AU-rich":[13],"elements":[14,37],"(ARE)":[15],"in":[16,41,80,83,108,131],"human":[17],"and":[18,26,35,53,68,92],"mouse":[19],"mRNA":[20],"3'UTR":[21],"sequences.":[22],"The":[23,135],"new":[24],"updated":[25],"enhanced":[27],"version":[28],"allows":[29],"detailed":[30],"AU,":[33],"GU":[34],"U-rich":[36],"(ARE,":[38],"GRE,":[39],"URE)":[40],"transcriptome":[43],"Homo":[45],"sapiens,":[46],"Mus":[47],"musculus,":[48],"Danio":[49],"rerio,":[50],"Caenorhabditis":[51],"elegans":[52],"Drosophila":[54],"melanogaster.":[55],"It":[56],"contains":[57],"information":[58],"on":[59],"genomic":[60],"location,":[61],"genic":[62],"context,":[63],"RNA":[64],"secondary":[65,95],"structure":[66],"context":[67],"conservation":[69],"annotated":[71],"motifs.":[72],"Improvements":[73],"include":[74,103],"annotation":[75],"motifs":[77,112],"not":[78],"only":[79],"3'UTRs":[81],"but":[82],"whole":[85],"gene":[86],"body":[87],"including":[88],"introns,":[89],"additional":[90],"genomes,":[91],"locally":[93],"stable":[94],"structures":[96],"from":[97,105],"genome":[98],"wide":[99],"scans.":[100],"Furthermore,":[101],"we":[102,118],"data":[104],"CLIP-Seq":[106],"experiments":[107],"order":[109],"to":[110,126],"highlight":[111],"with":[113,128],"validated":[114],"protein":[115],"interaction.":[116],"Additionally,":[117],"provide":[119],"a":[120,132],"REST":[121],"interface":[122],"experienced":[124],"users":[125],"interact":[127],"database":[130,136],"semi-automated":[133],"manner.":[134],"is":[137],"publicly":[138],"available":[139],"at:":[140],"http://rna.tbi.univie.ac.at/AREsite.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}