{"id":"https://openalex.org/W2030285103","doi":"https://doi.org/10.1093/nar/gkt378","title":"NAFlex: a web server for the study of nucleic acid flexibility","display_name":"NAFlex: a web server for the study of nucleic acid flexibility","publication_year":2013,"publication_date":"2013-05-17","ids":{"openalex":"https://openalex.org/W2030285103","doi":"https://doi.org/10.1093/nar/gkt378","mag":"2030285103","pmid":"https://pubmed.ncbi.nlm.nih.gov/23685436"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt378","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W47/16942056/gkt378.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/W1/W47/16942056/gkt378.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040654307","display_name":"Ignacio Faustino","orcid":"https://orcid.org/0000-0002-7732-1692"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Faustino","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071393850","display_name":"Rosana Collepardo\u2010Guevara","orcid":"https://orcid.org/0000-0003-1781-7351"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rosana Collepardo-Guevara","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100727346","display_name":"Carlos Gonz\u00e1lez","orcid":"https://orcid.org/0000-0001-8796-1282"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Gonz\u00e1lez","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088134705","display_name":"Josep Lluis Gelp\u00ed","orcid":"https://orcid.org/0000-0002-0566-7723"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josep Lluis Gelp\u00ed","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006399866","display_name":"Modesto Orozco","orcid":"https://orcid.org/0000-0002-8608-3278"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Modesto Orozco","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 2Joint IRB-BSC Programme on Computational Biology, Molecular Modelling and Bioinformatics (MMB) Department, 08028, Barcelona, Spain, 3Barcelona Supercomputing Center, Life-Science Department, 08034, Barcelona, Spain, 4National Institute of Bioinformatics, Structural Bioinformatics Node Division, 08028, Barcelona, Spain, 5Instituto de Qu\u00edmica F\u00edsica 'Rocasolano' C.S.I.C., Biological Physical Chemistry Department, 28006, Madrid, Spain, 6National Institute of Bioinformatics, Computational Bioinformatics Node Division, 08034, Barcelona, Spain and 7Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006399866"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.3758,"has_fulltext":true,"cited_by_count":64,"citation_normalized_percentile":{"value":0.80103734,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"41","issue":"W1","first_page":"W47","last_page":"W55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.8511859178543091},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6411810517311096},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6302751898765564},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5910318493843079},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5197708010673523},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4888021647930145},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4722404181957245},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45085471868515015},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43570268154144287},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4190574288368225},{"id":"https://openalex.org/keywords/cartesian-coordinate-system","display_name":"Cartesian coordinate system","score":0.41889747977256775},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1727721393108368},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.16525134444236755},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.11565172672271729},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11158543825149536},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10479196906089783},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09122121334075928}],"concepts":[{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.8511859178543091},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6411810517311096},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6302751898765564},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5910318493843079},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5197708010673523},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4888021647930145},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4722404181957245},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45085471868515015},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43570268154144287},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4190574288368225},{"id":"https://openalex.org/C16038011","wikidata":"https://www.wikidata.org/wiki/Q62912","display_name":"Cartesian coordinate system","level":2,"score":0.41889747977256775},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1727721393108368},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.16525134444236755},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.11565172672271729},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11158543825149536},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10479196906089783},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09122121334075928},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024101","descriptor_name":"Mitochondrial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D024101","descriptor_name":"Mitochondrial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D024101","descriptor_name":"Mitochondrial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkt378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt378","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W47/16942056/gkt378.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23685436","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23685436","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/255063","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/255063","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:europepmc.org:2686121","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692121","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/319219","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/319219","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.17863/cam.66339","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.66339","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt378","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W47/16942056/gkt378.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2030285103.pdf","grobid_xml":"https://content.openalex.org/works/W2030285103.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W565467649","https://openalex.org/W1966078827","https://openalex.org/W1972645332","https://openalex.org/W1979772546","https://openalex.org/W1983874017","https://openalex.org/W1990788003","https://openalex.org/W1991047673","https://openalex.org/W1998579075","https://openalex.org/W2012926074","https://openalex.org/W2017966780","https://openalex.org/W2032007025","https://openalex.org/W2032183039","https://openalex.org/W2035186580","https://openalex.org/W2040225908","https://openalex.org/W2048071682","https://openalex.org/W2052246375","https://openalex.org/W2060758841","https://openalex.org/W2066716706","https://openalex.org/W2069959076","https://openalex.org/W2081046982","https://openalex.org/W2095994064","https://openalex.org/W2099352677","https://openalex.org/W2102698033","https://openalex.org/W2112712631","https://openalex.org/W2113089013","https://openalex.org/W2118233996","https://openalex.org/W2127821584","https://openalex.org/W2130479394","https://openalex.org/W2132589721","https://openalex.org/W2136729627","https://openalex.org/W2136887986","https://openalex.org/W2144288821","https://openalex.org/W2150981663","https://openalex.org/W2154456026","https://openalex.org/W2160749048","https://openalex.org/W2161605421","https://openalex.org/W2170516638","https://openalex.org/W2170604299","https://openalex.org/W2172048860","https://openalex.org/W2317118383","https://openalex.org/W2322717217","https://openalex.org/W2347124867","https://openalex.org/W6644959307"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2101501829","https://openalex.org/W2985427592","https://openalex.org/W2003194288","https://openalex.org/W2060263731","https://openalex.org/W1971444612","https://openalex.org/W391093122","https://openalex.org/W1543504406","https://openalex.org/W4361305867"],"abstract_inverted_index":{"We":[0],"present":[1],"NAFlex,":[2],"a":[3,53,73,84,88,99,121],"new":[4],"web":[5],"tool":[6],"to":[7,18,26,43,61,77],"study":[8],"the":[9,24,68,155],"flexibility":[10],"of":[11,55,75,102,124,152],"nucleic":[12,49,64,79],"acids,":[13],"either":[14],"isolated":[15],"or":[16,47,112],"bound":[17],"other":[19],"molecules.":[20],"The":[21,70,107,147],"server":[22,71,148],"allows":[23],"user":[25],"incorporate":[27],"structures":[28,51],"from":[29,67,154],"protein":[30],"data":[31],"banks,":[32],"completing":[33],"gaps":[34],"and":[35,93,104,118,135,142],"removing":[36],"structural":[37],"inconsistencies.":[38],"It":[39],"is":[40,149],"also":[41],"possible":[42],"define":[44],"canonical":[45],"(average":[46],"sequence-adapted)":[48],"acid":[50,65,80],"using":[52,120],"variety":[54,74,101],"predefined":[56],"internal":[57],"libraries,":[58],"as":[59,83],"well":[60],"create":[62],"specific":[63],"conformations":[66],"sequence.":[69],"offers":[72],"methods":[76],"explore":[78],"flexibility,":[81],"such":[82],"colorless":[85],"wormlike-chain":[86],"model,":[87],"base-pair":[89],"resolution":[90],"mesoscopic":[91],"model":[92],"atomistic":[94],"molecular":[95],"dynamics":[96],"simulations":[97],"with":[98],"wide":[100],"protocols":[103],"force":[105],"fields.":[106],"trajectories":[108],"obtained":[109],"by":[110],"simulations,":[111],"imported":[113],"externally,":[114],"can":[115],"be":[116],"visualized":[117],"analyzed":[119],"large":[122],"number":[123],"tools,":[125],"including":[126],"standard":[127],"Cartesian":[128],"analysis,":[129,133],"essential":[130],"dynamics,":[131],"helical":[132],"local":[134],"global":[136],"stiffness,":[137],"energy":[138],"decomposition,":[139],"principal":[140],"components":[141],"in":[143],"silico":[144],"NMR":[145],"spectra.":[146],"accessible":[150],"free":[151],"charge":[153],"mmb.irbbarcelona.org/NAFlex":[156],"webpage.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
