{"id":"https://openalex.org/W1969142598","doi":"https://doi.org/10.1093/nar/gkr811","title":"Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format","display_name":"Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format","publication_year":2011,"publication_date":"2011-10-05","ids":{"openalex":"https://openalex.org/W1969142598","doi":"https://doi.org/10.1093/nar/gkr811","mag":"1969142598","pmid":"https://pubmed.ncbi.nlm.nih.gov/21976737"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr811","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr811","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D453/9481639/gkr811.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D453/9481639/gkr811.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080613861","display_name":"Akira R. Kinjo","orcid":"https://orcid.org/0000-0002-4006-8208"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"A. R. Kinjo","raw_affiliation_strings":["Institute for Protein Research and Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002113575","display_name":"Hiroshi Suzuki","orcid":"https://orcid.org/0000-0001-5371-6385"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Suzuki","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101697566","display_name":"Riu Yamashita","orcid":"https://orcid.org/0000-0003-0068-6949"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"R. Yamashita","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085893334","display_name":"Yojiro Ikegawa","orcid":"https://orcid.org/0000-0002-4963-4915"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Ikegawa","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109927153","display_name":"Takahiro KUDOU","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Kudou","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070730292","display_name":"Ryo Igarashi","orcid":"https://orcid.org/0000-0002-1197-6645"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"R. Igarashi","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022982698","display_name":"Yumiko Kengaku","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Kengaku","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100750123","display_name":"Hyun Jin Cho","orcid":"https://orcid.org/0009-0006-8606-0283"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Cho","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003461562","display_name":"Daron M. Standley","orcid":"https://orcid.org/0000-0003-4078-0817"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"D. M. Standley","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006122700","display_name":"Atsushi Nakagawa","orcid":"https://orcid.org/0000-0002-1700-7861"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"A. Nakagawa","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109030144","display_name":"H. Nakamura","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"Osaka University","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Nakamura","raw_affiliation_strings":["Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Protein Research and 2Immunology Frontier Research Center, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan","institution_ids":["https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5080613861"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.2115,"has_fulltext":false,"cited_by_count":142,"citation_normalized_percentile":{"value":0.96517943,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D453","last_page":"D460"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.9044766426086426},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.862445592880249},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.7298009991645813},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.618432343006134},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5122501254081726},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4997100830078125},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47576087713241577},{"id":"https://openalex.org/keywords/data-bank","display_name":"Data bank","score":0.4492083489894867},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4360893666744232},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.42650237679481506},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4187377691268921},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4148905277252197},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39404815435409546},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.3756568431854248},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.11263075470924377},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07923772931098938}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.9044766426086426},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.862445592880249},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.7298009991645813},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.618432343006134},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5122501254081726},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4997100830078125},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47576087713241577},{"id":"https://openalex.org/C2779786304","wikidata":"https://www.wikidata.org/wiki/Q5227243","display_name":"Data bank","level":2,"score":0.4492083489894867},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4360893666744232},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.42650237679481506},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4187377691268921},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4148905277252197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39404815435409546},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.3756568431854248},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.11263075470924377},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07923772931098938},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr811","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr811","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D453/9481639/gkr811.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21976737","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21976737","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D453","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D453","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245181","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245181","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr811","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr811","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D453/9481639/gkr811.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1969142598.pdf","grobid_xml":"https://content.openalex.org/works/W1969142598.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W13024833","https://openalex.org/W1487060125","https://openalex.org/W1584888540","https://openalex.org/W1794629994","https://openalex.org/W1963538288","https://openalex.org/W1969726382","https://openalex.org/W1986199568","https://openalex.org/W2017016843","https://openalex.org/W2031771080","https://openalex.org/W2035460215","https://openalex.org/W2061636126","https://openalex.org/W2062602834","https://openalex.org/W2087487725","https://openalex.org/W2093410900","https://openalex.org/W2103613886","https://openalex.org/W2109872885","https://openalex.org/W2112422063","https://openalex.org/W2115236937","https://openalex.org/W2119087770","https://openalex.org/W2119362018","https://openalex.org/W2136539307","https://openalex.org/W2139229287","https://openalex.org/W2140290790","https://openalex.org/W2146442590","https://openalex.org/W2146770788","https://openalex.org/W2147085530","https://openalex.org/W2150306348","https://openalex.org/W2150852650","https://openalex.org/W2158714788","https://openalex.org/W2159675211","https://openalex.org/W2160488448","https://openalex.org/W2161062388","https://openalex.org/W2164010954","https://openalex.org/W2165428180","https://openalex.org/W2170441710","https://openalex.org/W2171681733","https://openalex.org/W2186542288","https://openalex.org/W3045699281","https://openalex.org/W3099958414","https://openalex.org/W3101075981","https://openalex.org/W4229743141","https://openalex.org/W4243460074"],"related_works":["https://openalex.org/W4254578499","https://openalex.org/W2088162897","https://openalex.org/W2119891507","https://openalex.org/W4323965882","https://openalex.org/W2089869950","https://openalex.org/W2067836881","https://openalex.org/W1645310797","https://openalex.org/W2130479394","https://openalex.org/W2147809382","https://openalex.org/W3172631559"],"abstract_inverted_index":{"The":[0],"Protein":[1,13],"Data":[2,14],"Bank":[3,15],"Japan":[4],"(PDBj,":[5],"http://pdbj.org)":[6],"is":[7],"a":[8,42,114],"member":[9],"of":[10,24,45,54,66],"the":[11,21,31,64,67,78,89,96,103,107,110,118],"worldwide":[12],"(wwPDB)":[16],"and":[17,19,47,52],"accepts":[18],"processes":[20],"deposited":[22],"data":[23,76,112],"experimentally":[25],"determined":[26],"macromolecular":[27],"structures.":[28],"While":[29],"maintaining":[30],"archive":[32],"in":[33,59,77,88,102],"collaboration":[34],"with":[35,85,120],"other":[36,121],"wwPDB":[37],"partners,":[38],"PDBj":[39],"also":[40],"provides":[41],"wide":[43],"range":[44],"services":[46],"tools":[48],"for":[49,106],"analyzing":[50],"structures":[51],"functions":[53],"proteins,":[55],"which":[56],"are":[57],"summarized":[58],"this":[60],"article.":[61],"To":[62],"enhance":[63],"interoperability":[65],"PDB":[68,75,97,119],"data,":[69],"we":[70],"have":[71],"recently":[72],"developed":[73],"PDB/RDF,":[74],"Resource":[79],"Description":[80],"Framework":[81],"(RDF)":[82],"format,":[83],"along":[84],"its":[86],"ontology":[87],"Web":[90],"Ontology":[91],"Language":[92],"(OWL)":[93],"based":[94],"on":[95],"mmCIF":[98],"Exchange":[99],"Dictionary.":[100],"Being":[101],"standard":[104],"format":[105],"Semantic":[108],"Web,":[109],"PDB/RDF":[111],"provide":[113],"means":[115],"to":[116],"integrate":[117],"biological":[122],"information":[123],"resources.":[124]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":7}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
