{"id":"https://openalex.org/W1967686998","doi":"https://doi.org/10.1093/nar/gkr410","title":"SA-Mot: a web server for the identification of motifs of interest extracted from protein loops","display_name":"SA-Mot: a web server for the identification of motifs of interest extracted from protein loops","publication_year":2011,"publication_date":"2011-06-10","ids":{"openalex":"https://openalex.org/W1967686998","doi":"https://doi.org/10.1093/nar/gkr410","mag":"1967686998","pmid":"https://pubmed.ncbi.nlm.nih.gov/21665924"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr410","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr410","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W203/18783923/gkr410.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W203/18783923/gkr410.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066913640","display_name":"Leslie Regad","orcid":"https://orcid.org/0000-0002-9292-5283"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Leslie Regad","raw_affiliation_strings":["INSERM, U973, Universit\u00e9 Paris 7-Paris Diderot, UMR-S973, MTi F-75013 Paris, France. leslie.regad@univ-paris-diderot.fr","INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, U973, Universit\u00e9 Paris 7-Paris Diderot, UMR-S973, MTi F-75013 Paris, France. leslie.regad@univ-paris-diderot.fr","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I169173203"]},{"raw_affiliation_string":"INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015050433","display_name":"Adrien Saladin","orcid":"https://orcid.org/0000-0002-0011-6578"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Adrien Saladin","raw_affiliation_strings":["INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039355513","display_name":"Julien Maupetit","orcid":"https://orcid.org/0000-0001-6285-6646"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julien Maupetit","raw_affiliation_strings":["INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035803488","display_name":"Colette Geneix","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Colette Geneix","raw_affiliation_strings":["INSERM, U973,","Universite Paris 7 -Paris Diderot, UMR-S973, MTi and","INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, U973,","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universite Paris 7 -Paris Diderot, UMR-S973, MTi and","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I169173203"]},{"raw_affiliation_string":"INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015097541","display_name":"Anne\u2010Claude Camproux","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne-Claude Camproux","raw_affiliation_strings":["INSERM, U973,","Universite Paris 7 -Paris Diderot, UMR-S973, MTi and","INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France"],"affiliations":[{"raw_affiliation_string":"INSERM, U973,","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Universite Paris 7 -Paris Diderot, UMR-S973, MTi and","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I169173203"]},{"raw_affiliation_string":"INSERM, U973, 2 Universit\u00e9 Paris 7 - Paris Diderot, UMR-S973, MTi and 3 Ressource Parisienne en Bioinformatique Structurale (RPBS), Universit\u00e9 Paris 7 - Paris Diderot, F-75013 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5066913640"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.3984,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.61018476,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"39","issue":"suppl_2","first_page":"W203","last_page":"W209"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.702378511428833},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6963644027709961},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6710066795349121},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5948397517204285},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.5658971667289734},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.43324393033981323},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3758467435836792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34401634335517883},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.22302603721618652},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2194196879863739},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1339871883392334},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.10499218106269836},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10383915901184082},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07652401924133301}],"concepts":[{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.702378511428833},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6963644027709961},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6710066795349121},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5948397517204285},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5658971667289734},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.43324393033981323},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3758467435836792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34401634335517883},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.22302603721618652},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2194196879863739},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1339871883392334},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.10499218106269836},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10383915901184082},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07652401924133301},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkr410","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr410","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W203/18783923/gkr410.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21665924","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21665924","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3125790","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125790","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr410","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr410","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W203/18783923/gkr410.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1967686998.pdf","grobid_xml":"https://content.openalex.org/works/W1967686998.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1970654380","https://openalex.org/W2004589024","https://openalex.org/W2005240848","https://openalex.org/W2006421122","https://openalex.org/W2017727500","https://openalex.org/W2026866826","https://openalex.org/W2037993016","https://openalex.org/W2044284701","https://openalex.org/W2060418270","https://openalex.org/W2070318172","https://openalex.org/W2076017572","https://openalex.org/W2085031841","https://openalex.org/W2085277871","https://openalex.org/W2095920861","https://openalex.org/W2096425628","https://openalex.org/W2099182237","https://openalex.org/W2101386484","https://openalex.org/W2107966552","https://openalex.org/W2111427806","https://openalex.org/W2125800162","https://openalex.org/W2130479394","https://openalex.org/W2146091387","https://openalex.org/W2146231163","https://openalex.org/W2147859827","https://openalex.org/W2152013549","https://openalex.org/W2158266834","https://openalex.org/W2171172158","https://openalex.org/W2225480587","https://openalex.org/W4296472334","https://openalex.org/W6671590065","https://openalex.org/W6676280084"],"related_works":["https://openalex.org/W2029514038","https://openalex.org/W2088487249","https://openalex.org/W2111937814","https://openalex.org/W2105364679","https://openalex.org/W2026882519","https://openalex.org/W2164809504","https://openalex.org/W1967686998","https://openalex.org/W2168926448","https://openalex.org/W2776264363","https://openalex.org/W2133328876"],"abstract_inverted_index":{"The":[0,147],"detection":[1],"of":[2,12,31,34,63,88],"functional":[3,49],"motifs":[4,33,58,75,91,118],"is":[5,151],"an":[6,112],"important":[7,140],"step":[8],"for":[9,26,141],"the":[10,27,67,96,131,142],"determination":[11],"protein":[13,37,143],"functions.":[14],"We":[15],"present":[16],"here":[17],"a":[18,86,121],"new":[19],"web":[20,149],"server":[21,150],"SA-Mot":[22,43,65,84,108,148],"(Structural":[23],"Alphabet":[24],"Motif)":[25],"extraction":[28],"and":[29,55,100,105,124,145],"location":[30],"structural":[32,57,61,68,74,90,106,117],"interest":[35],"from":[36,76,120],"loops.":[38,64],"Contrary":[39],"to":[40,71,80,111],"other":[41],"methods,":[42],"does":[44],"not":[45],"focus":[46],"only":[47],"on":[48],"motifs,":[50],"but":[51],"it":[52],"extracts":[53],"recurrent":[54],"conserved":[56],"involved":[59],"in":[60,95,101],"redundancy":[62],"uses":[66],"word":[69],"notion":[70],"extract":[72],"all":[73,116],"uni-dimensional":[77],"sequences":[78],"corresponding":[79],"loop":[81,97,136],"structures.":[82],"Then,":[83],"provides":[85],"description":[87],"these":[89],"using":[92],"statistics":[93],"computed":[94],"data":[98],"set":[99],"SCOP":[102],"superfamily,":[103],"sequence":[104],"parameters.":[107],"results":[109],"correspond":[110],"interactive":[113],"table":[114],"listing":[115],"extracted":[119],"target":[122],"structure":[123],"their":[125],"associated":[126],"descriptors.":[127],"Using":[128],"this":[129],"information,":[130],"users":[132],"can":[133],"easily":[134],"locate":[135],"regions":[137],"that":[138],"are":[139],"folding":[144],"function.":[146],"available":[152],"at":[153],"http://sa-mot.mti.univ-paris-diderot.fr.":[154]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-07T13:37:22.277990","created_date":"2025-10-10T00:00:00"}
