{"id":"https://openalex.org/W1985468994","doi":"https://doi.org/10.1093/nar/gkr1058","title":"The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis","display_name":"The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis","publication_year":2011,"publication_date":"2011-11-15","ids":{"openalex":"https://openalex.org/W1985468994","doi":"https://doi.org/10.1093/nar/gkr1058","mag":"1985468994","pmid":"https://pubmed.ncbi.nlm.nih.gov/22086956"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr1058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1058","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1313/9476955/gkr1058.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1313/9476955/gkr1058.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100410871","display_name":"Jing\u2010Woei Li","orcid":"https://orcid.org/0000-0001-6167-7689"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"J.-W. Li","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR. dan.bolser@gmail.com","School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR. dan.bolser@gmail.com","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011019908","display_name":"Keith Robison","orcid":"https://orcid.org/0000-0001-5566-382X"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210086037","display_name":"Max Planck Innovation","ror":"https://ror.org/00d0v0049","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210086037"]}],"countries":["DE","HK","SE"],"is_corresponding":false,"raw_author_name":"K. Robison","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","Max Planck Society, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I177725633","https://openalex.org/I200332995"]},{"raw_affiliation_string":"Max Planck Society, Munich, Germany","institution_ids":["https://openalex.org/I4210086037","https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088798234","display_name":"Marcel Martin","orcid":"https://orcid.org/0000-0002-0680-200X"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210086037","display_name":"Max Planck Innovation","ror":"https://ror.org/00d0v0049","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210086037"]}],"countries":["DE","HK","SE"],"is_corresponding":false,"raw_author_name":"M. Martin","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","Max Planck Society, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I177725633","https://openalex.org/I200332995"]},{"raw_affiliation_string":"Max Planck Society, Munich, Germany","institution_ids":["https://openalex.org/I4210086037","https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034528790","display_name":"Andreas Sj\u00f6din","orcid":"https://orcid.org/0000-0001-5350-4219"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210086037","display_name":"Max Planck Innovation","ror":"https://ror.org/00d0v0049","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210086037"]}],"countries":["DE","HK","SE"],"is_corresponding":false,"raw_author_name":"A. Sjodin","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","Max Planck Society, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I177725633","https://openalex.org/I200332995"]},{"raw_affiliation_string":"Max Planck Society, Munich, Germany","institution_ids":["https://openalex.org/I4210086037","https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011858960","display_name":"Bj\u00f6rn Usadel","orcid":"https://orcid.org/0000-0003-0921-8041"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210105972","display_name":"Max Planck Institute of Molecular Plant Physiology","ror":"https://ror.org/01fbde567","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210105972"]}],"countries":["DE","HK","SE"],"is_corresponding":false,"raw_author_name":"B. Usadel","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","Integrative Carbon Biology, Department Stitt, Max Planck Institute of Molecular Plant Physiology, Max Planck Society"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I177725633","https://openalex.org/I200332995"]},{"raw_affiliation_string":"Integrative Carbon Biology, Department Stitt, Max Planck Institute of Molecular Plant Physiology, Max Planck Society","institution_ids":["https://openalex.org/I4210105972","https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102865314","display_name":"Michael J. Young","orcid":"https://orcid.org/0000-0002-5277-2104"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210086037","display_name":"Max Planck Innovation","ror":"https://ror.org/00d0v0049","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210086037"]}],"countries":["DE","HK","SE"],"is_corresponding":false,"raw_author_name":"M. Young","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","Max Planck Society, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I177725633","https://openalex.org/I200332995"]},{"raw_affiliation_string":"Max Planck Society, Munich, Germany","institution_ids":["https://openalex.org/I4210086037","https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042858588","display_name":"Eric C. Olivares","orcid":null},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210086037","display_name":"Max Planck Innovation","ror":"https://ror.org/00d0v0049","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210086037"]}],"countries":["DE","HK","SE"],"is_corresponding":true,"raw_author_name":"E. C. Olivares","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","Max Planck Society, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I177725633","https://openalex.org/I200332995"]},{"raw_affiliation_string":"Max Planck Society, Munich, Germany","institution_ids":["https://openalex.org/I4210086037","https://openalex.org/I149899117"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005347238","display_name":"Dan Bolser","orcid":"https://orcid.org/0000-0002-3991-0859"},"institutions":[{"id":"https://openalex.org/I1291458624","display_name":"Swedish Defence Research Agency","ror":"https://ror.org/0470cgs30","country_code":"SE","type":"funder","lineage":["https://openalex.org/I1291458624"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]},{"id":"https://openalex.org/I4210086037","display_name":"Max Planck Innovation","ror":"https://ror.org/00d0v0049","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210086037"]}],"countries":["DE","HK","SE"],"is_corresponding":true,"raw_author_name":"D. M. Bolser","raw_affiliation_strings":["School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","Max Planck Society, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR, 2 Warp Drive Biosynthetics, 215 First St., 4th Floor, Cambridge MA 02142, USA 3 Bioinformatics for High-throughput Technologies, Department of Computer Science, TU Dortmund, Germany, 4 Division of CBRN Security and Defence, FOI \u2013 Swedish Defence Research Agency, Ume\u00e5, Sweden, 5 Max Planck Institute of Molecular Plant Physiology, Potsdam, 6 RWTH Aachen University, Aachen, Germany, 7 Bioinformatics Division, Walter and Eliza Hall Institute, Parkville 3052, Australia, 8 SEQanswers.com, Union City, CA 94587, USA and 9 Department of Bioinformatics, Dundee University, Dundee, DD47JR, UK","institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I177725633","https://openalex.org/I200332995"]},{"raw_affiliation_string":"Max Planck Society, Munich, Germany","institution_ids":["https://openalex.org/I4210086037","https://openalex.org/I149899117"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5005347238","https://openalex.org/A5042858588","https://openalex.org/A5100410871"],"corresponding_institution_ids":["https://openalex.org/I1291458624","https://openalex.org/I149899117","https://openalex.org/I177725633","https://openalex.org/I200332995","https://openalex.org/I4210086037"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.4325,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.89113712,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"40","issue":"D1","first_page":"D1313","last_page":"D1317"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6245556473731995},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5426788926124573},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5057711601257324},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.43655824661254883},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4330659806728363},{"id":"https://openalex.org/keywords/service-provider","display_name":"Service provider","score":0.41567301750183105},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39292609691619873},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34906065464019775}],"concepts":[{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6245556473731995},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5426788926124573},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5057711601257324},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.43655824661254883},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4330659806728363},{"id":"https://openalex.org/C116537","wikidata":"https://www.wikidata.org/wiki/Q2169973","display_name":"Service provider","level":3,"score":0.41567301750183105},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39292609691619873},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34906065464019775},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkr1058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1058","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1313/9476955/gkr1058.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22086956","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22086956","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.816.828","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.816.828","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/fd/58/gkr1058.PMC3245082.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D1313","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D1313","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:publications.rwth-aachen.de:191226","is_oa":true,"landing_page_url":"https://publications.rwth-aachen.de/record/191226","pdf_url":null,"source":{"id":"https://openalex.org/S4306401362","display_name":"RWTH Publications (RWTH Aachen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887968799","host_organization_name":"RWTH Aachen University","host_organization_lineage":["https://openalex.org/I887968799"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research 2012, (2012). doi:10.1093/nar/gkr1058","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245082","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245082","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_1814449","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0014-1F36-B","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr1058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1058","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1313/9476955/gkr1058.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1985468994.pdf","grobid_xml":"https://content.openalex.org/works/W1985468994.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1507593999","https://openalex.org/W2001142689","https://openalex.org/W2006803093","https://openalex.org/W2102789902","https://openalex.org/W2109615707","https://openalex.org/W2118062583","https://openalex.org/W2126311339","https://openalex.org/W2133894160","https://openalex.org/W2135361281","https://openalex.org/W4256005559"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2081647779","https://openalex.org/W2108237372","https://openalex.org/W4237750775","https://openalex.org/W3128051602","https://openalex.org/W3217387898","https://openalex.org/W2370597599","https://openalex.org/W1981207589","https://openalex.org/W2139953704","https://openalex.org/W2963891724"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,111],"sequencing":[3,99],"technology":[4],"have":[5],"created":[6,20,137],"unprecedented":[7],"opportunities":[8],"for":[9,23,31,62,97,139],"biological":[10],"research.":[11],"However,":[12],"the":[13,29,35,44,79,82,114,134,158,167],"increasing":[14],"throughput":[15],"of":[16,38,46,81,92,162,174,182],"these":[17],"technologies":[18,50,94],"has":[19,108,136,155],"many":[21],"challenges":[22],"data":[24],"management":[25],"and":[26,40,76,95,117,128,148,178],"analysis.":[27],"As":[28,49],"demand":[30],"sophisticated":[32],"analyses":[33],"increases,":[34],"development":[36],"time":[37],"software":[39],"algorithms":[41],"is":[42,68,73,190],"outpacing":[43],"speed":[45],"traditional":[47],"publication.":[48],"continue":[51],"to":[52,121],"be":[53],"developed,":[54],"methods":[55],"change":[56],"rapidly,":[57],"making":[58],"publications":[59],"less":[60],"relevant":[61],"users.":[63],"The":[64,86,169],"SEQanswers":[65,83],"wiki":[66,70,87,170],"(SEQwiki)":[67],"a":[69,179],"database":[71,161],"that":[72],"actively":[74],"edited":[75],"updated":[77],"by":[78],"members":[80],"community":[84,135],"(http://SEQanswers.com/).":[85],"provides":[88],"an":[89],"extensive":[90],"catalogue":[91],"tools,":[93,142,177],"tutorials":[96],"high-throughput":[98],"(HTS),":[100],"including":[101],"information":[102],"about":[103],"HTS":[104,163,186],"service":[105,187],"providers.":[106,188],"It":[107],"been":[109],"implemented":[110],"MediaWiki":[112,116],"with":[113,143],"Semantic":[115,118],"Forms":[119],"extensions":[120],"collect":[122],"structured":[123],"data,":[124],"providing":[125],"powerful":[126],"navigation":[127],"reporting":[129],"features.":[130],"Within":[131],"2":[132],"years,":[133],"pages":[138],"over":[140],"500":[141],"approximately":[144],"400":[145],"literature":[146],"references":[147],"600":[149],"web":[150],"links.":[151],"This":[152],"collaborative":[153],"effort":[154],"made":[156],"SEQwiki":[157,189],"most":[159],"comprehensive":[160],"tools":[164],"anywhere":[165],"on":[166],"web.":[168],"includes":[171],"task-focused":[172],"mini-reviews":[173],"commonly":[175],"used":[176],"growing":[180],"collection":[181],"more":[183],"than":[184],"100":[185],"available":[191],"at:":[192],"http://wiki.SEQanswers.com/.":[193]},"counts_by_year":[{"year":2023,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
