{"id":"https://openalex.org/W2008702220","doi":"https://doi.org/10.1093/nar/gkq517","title":"chipD: a web tool to design oligonucleotide probes for high-density tiling arrays","display_name":"chipD: a web tool to design oligonucleotide probes for high-density tiling arrays","publication_year":2010,"publication_date":"2010-06-06","ids":{"openalex":"https://openalex.org/W2008702220","doi":"https://doi.org/10.1093/nar/gkq517","mag":"2008702220","pmid":"https://pubmed.ncbi.nlm.nih.gov/20529880"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq517","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq517","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W321/3907073/gkq517.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W321/3907073/gkq517.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078236108","display_name":"Y. Dufour","orcid":"https://orcid.org/0000-0003-0244-0192"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I1304256225","display_name":"University of Wisconsin System","ror":"https://ror.org/03ydkyb10","country_code":"US","type":"education","lineage":["https://openalex.org/I1304256225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Y. S. Dufour","raw_affiliation_strings":["Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA. ydufour@wisc.edu","Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA. ydufour@wisc.edu","institution_ids":["https://openalex.org/I1304256225"]},{"raw_affiliation_string":"Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074002180","display_name":"G.E. Wesenberg","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. E. Wesenberg","raw_affiliation_strings":["Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076792091","display_name":"Andrew Tritt","orcid":"https://orcid.org/0000-0002-1617-449X"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. J. Tritt","raw_affiliation_strings":["Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078107033","display_name":"Jeremy D. Glasner","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. D. Glasner","raw_affiliation_strings":["Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028916575","display_name":"Nicole T. Perna","orcid":"https://orcid.org/0000-0001-8208-0929"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. T. Perna","raw_affiliation_strings":["Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072733509","display_name":"James C. Mitchell","orcid":"https://orcid.org/0000-0001-9887-2680"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. C. Mitchell","raw_affiliation_strings":["Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045417376","display_name":"Timothy J. Donohue","orcid":"https://orcid.org/0000-0001-8738-2467"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. J. Donohue","raw_affiliation_strings":["Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bacteriology, 2BACTER Institute, 3Department of Genetics, 4UW Biotechnology Center, 5Department of Mathematics and 6Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5078236108"],"corresponding_institution_ids":["https://openalex.org/I1304256225","https://openalex.org/I135310074"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.1588,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.86852402,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"Web Server","first_page":"W321","last_page":"W325"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tiling-array","display_name":"Tiling array","score":0.7884774208068848},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7375417947769165},{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.7097296714782715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5335709452629089},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45344290137290955},{"id":"https://openalex.org/keywords/chip","display_name":"Chip","score":0.4408611059188843},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3975429832935333},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.3845338225364685},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3161752223968506},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29149430990219116},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25156456232070923},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1410721242427826}],"concepts":[{"id":"https://openalex.org/C119401833","wikidata":"https://www.wikidata.org/wiki/Q7802158","display_name":"Tiling array","level":5,"score":0.7884774208068848},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7375417947769165},{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.7097296714782715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5335709452629089},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45344290137290955},{"id":"https://openalex.org/C165005293","wikidata":"https://www.wikidata.org/wiki/Q1074500","display_name":"Chip","level":2,"score":0.4408611059188843},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3975429832935333},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.3845338225364685},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3161752223968506},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29149430990219116},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25156456232070923},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1410721242427826},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012242","descriptor_name":"Rhodobacter sphaeroides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012242","descriptor_name":"Rhodobacter sphaeroides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012242","descriptor_name":"Rhodobacter sphaeroides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012242","descriptor_name":"Rhodobacter sphaeroides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkq517","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq517","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W321/3907073/gkq517.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20529880","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20529880","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:1955849","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2896189","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W321","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W321","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq517","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq517","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W321/3907073/gkq517.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2008702220.pdf","grobid_xml":"https://content.openalex.org/works/W2008702220.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1988220558","https://openalex.org/W2011092431","https://openalex.org/W2014829665","https://openalex.org/W2018166918","https://openalex.org/W2020659583","https://openalex.org/W2020970057","https://openalex.org/W2026283092","https://openalex.org/W2095691402","https://openalex.org/W2111933532","https://openalex.org/W2123100813","https://openalex.org/W2130238663","https://openalex.org/W2131106071","https://openalex.org/W2131980582","https://openalex.org/W2133583181","https://openalex.org/W2135995702","https://openalex.org/W2148237482","https://openalex.org/W2171396485"],"related_works":["https://openalex.org/W2097647803","https://openalex.org/W2085475821","https://openalex.org/W2048404795","https://openalex.org/W2034858540","https://openalex.org/W2141222206","https://openalex.org/W1966352654","https://openalex.org/W1978677326","https://openalex.org/W2031502293","https://openalex.org/W2395975409","https://openalex.org/W2026378828"],"abstract_inverted_index":{"chipD":[0,124,137],"is":[1,138],"a":[2,21,35,50,107],"web":[3],"server":[4,33],"that":[5,39,54],"facilitates":[6],"design":[7,57,130],"of":[8,23,52,112],"DNA":[9],"oligonucleotide":[10],"probes":[11,73,79,84],"for":[12,133],"high-density":[13],"tiling":[14,131],"arrays,":[15],"which":[16],"can":[17],"be":[18,59,81,97],"used":[19,127],"in":[20,44,106],"number":[22],"genomic":[24,117],"applications":[25],"such":[26],"as":[27,41],"ChIP-chip":[28],"or":[29,65],"gene-expression":[30],"profiling.":[31],"The":[32,70,103],"implements":[34],"probe":[36,56,113],"selection":[37],"algorithm":[38,71],"takes":[40],"an":[42],"input,":[43],"addition":[45],"to":[46,58,61,74,129],"the":[47,66,92,110],"target":[48,93],"sequences,":[49],"set":[51],"parameters":[53],"allow":[55],"tailored":[60],"specific":[62],"applications,":[63],"protocols":[64],"array":[67],"manufacturer's":[68],"requirements.":[69],"optimizes":[72],"meet":[75],"three":[76],"objectives:":[77],"(i)":[78],"should":[80,85,96],"specific;":[82],"(ii)":[83],"have":[86],"similar":[87],"thermodynamic":[88],"properties;":[89],"and":[90,99,121,135],"(iii)":[91],"sequence":[94],"coverage":[95],"homogeneous":[98],"avoid":[100],"significant":[101],"gaps.":[102],"output":[104],"provides":[105],"text":[108],"format,":[109],"list":[111],"sequences":[114],"with":[115],"their":[116],"locations,":[118],"targeted":[119],"strands":[120],"hybridization":[122],"characteristics.":[123],"has":[125],"been":[126],"successfully":[128],"arrays":[132],"bacteria":[134],"yeast.":[136],"available":[139],"at":[140],"http://chipd.uwbacter.org/.":[141]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}