{"id":"https://openalex.org/W2094173044","doi":"https://doi.org/10.1093/nar/gkq474","title":"PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences","display_name":"PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences","publication_year":2010,"publication_date":"2010-05-27","ids":{"openalex":"https://openalex.org/W2094173044","doi":"https://doi.org/10.1093/nar/gkq474","mag":"2094173044","pmid":"https://pubmed.ncbi.nlm.nih.gov/20507911"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq474","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq474","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W412/3891073/gkq474.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W412/3891073/gkq474.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016149073","display_name":"Yoichi Murakami","orcid":"https://orcid.org/0000-0001-9536-1631"},"institutions":[{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Murakami","raw_affiliation_strings":["Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan","institution_ids":["https://openalex.org/I4210152009"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032937063","display_name":"Ruth V. Spriggs","orcid":"https://orcid.org/0000-0002-5666-926X"},"institutions":[{"id":"https://openalex.org/I162608824","display_name":"University of Sussex","ror":"https://ror.org/00ayhx656","country_code":"GB","type":"education","lineage":["https://openalex.org/I162608824"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"R. V. Spriggs","raw_affiliation_strings":["Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan and 2 Department of Chemistry and Biochemistry, School of Life Sciences, John Maynard-Smith Building, University of Sussex, Falmer BN1 9QG, UK","University of Sussex, Brighton, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan and 2 Department of Chemistry and Biochemistry, School of Life Sciences, John Maynard-Smith Building, University of Sussex, Falmer BN1 9QG, UK","institution_ids":["https://openalex.org/I4210152009"]},{"raw_affiliation_string":"University of Sussex, Brighton, United Kingdom","institution_ids":["https://openalex.org/I162608824"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109030144","display_name":"H. Nakamura","orcid":null},"institutions":[{"id":"https://openalex.org/I162608824","display_name":"University of Sussex","ror":"https://ror.org/00ayhx656","country_code":"GB","type":"education","lineage":["https://openalex.org/I162608824"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]}],"countries":["GB","JP"],"is_corresponding":false,"raw_author_name":"H. Nakamura","raw_affiliation_strings":["Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan and 2 Department of Chemistry and Biochemistry, School of Life Sciences, John Maynard-Smith Building, University of Sussex, Falmer BN1 9QG, UK","University of Sussex, Brighton, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan and 2 Department of Chemistry and Biochemistry, School of Life Sciences, John Maynard-Smith Building, University of Sussex, Falmer BN1 9QG, UK","institution_ids":["https://openalex.org/I4210152009"]},{"raw_affiliation_string":"University of Sussex, Brighton, United Kingdom","institution_ids":["https://openalex.org/I162608824"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056247922","display_name":"Susan R. Jones","orcid":"https://orcid.org/0000-0002-1560-9009"},"institutions":[{"id":"https://openalex.org/I162608824","display_name":"University of Sussex","ror":"https://ror.org/00ayhx656","country_code":"GB","type":"education","lineage":["https://openalex.org/I162608824"]},{"id":"https://openalex.org/I4210152009","display_name":"Protein Research Foundation","ror":"https://ror.org/03yzv7g36","country_code":"JP","type":"other","lineage":["https://openalex.org/I4210152009"]}],"countries":["GB","JP"],"is_corresponding":true,"raw_author_name":"S. Jones","raw_affiliation_strings":["Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan and 2 Department of Chemistry and Biochemistry, School of Life Sciences, John Maynard-Smith Building, University of Sussex, Falmer BN1 9QG, UK","University of Sussex, Brighton, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Protein Informatics, Research Center for Structural and Functional Proteomics, Institute for Protein Research, Osaka University, Osaka, Japan and 2 Department of Chemistry and Biochemistry, School of Life Sciences, John Maynard-Smith Building, University of Sussex, Falmer BN1 9QG, UK","institution_ids":["https://openalex.org/I4210152009"]},{"raw_affiliation_string":"University of Sussex, Brighton, United Kingdom","institution_ids":["https://openalex.org/I162608824"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5056247922"],"corresponding_institution_ids":["https://openalex.org/I162608824","https://openalex.org/I4210152009"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.9922,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.86145529,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"Web Server","first_page":"W412","last_page":"W416"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.764203667640686},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7364866733551025},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6343059539794922},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.5801315903663635},{"id":"https://openalex.org/keywords/matthews-correlation-coefficient","display_name":"Matthews correlation coefficient","score":0.5440759658813477},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48771461844444275},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.42757993936538696},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3852490782737732},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37668782472610474},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3742522895336151},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31673240661621094},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3035128116607666},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.17164266109466553},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16123047471046448}],"concepts":[{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.764203667640686},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7364866733551025},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6343059539794922},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.5801315903663635},{"id":"https://openalex.org/C164085508","wikidata":"https://www.wikidata.org/wiki/Q4811327","display_name":"Matthews correlation coefficient","level":3,"score":0.5440759658813477},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48771461844444275},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.42757993936538696},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3852490782737732},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37668782472610474},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3742522895336151},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31673240661621094},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3035128116607666},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.17164266109466553},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16123047471046448},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkq474","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq474","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W412/3891073/gkq474.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20507911","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20507911","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1010.2565","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1010.2565","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2010/05/27/nar.gkq474.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.994.2019","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.994.2019","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/38/suppl_2/W412.full.pdf","raw_type":"text"},{"id":"pmh:oai:figshare.com:article/23346983","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/PiRaNhA_A_server_for_the_computational_prediction_of_RNA-binding_residues_in_protein_sequences/23346983","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W412","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W412","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896099","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkq474","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:sro.sussex.ac.uk:21120","is_oa":false,"landing_page_url":"http://sro.sussex.ac.uk/id/eprint/21120/1/Nucl._Acids_Res.-2010-Murakami-W412-6.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400129","display_name":"Sussex Research Online (University of Sussex)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I162608824","host_organization_name":"University of Sussex","host_organization_lineage":["https://openalex.org/I162608824"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq474","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq474","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W412/3891073/gkq474.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2094173044.pdf","grobid_xml":"https://content.openalex.org/works/W2094173044.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1924414119","https://openalex.org/W1971894358","https://openalex.org/W1975304761","https://openalex.org/W1976521702","https://openalex.org/W2051628563","https://openalex.org/W2060683541","https://openalex.org/W2062606245","https://openalex.org/W2076563297","https://openalex.org/W2079873244","https://openalex.org/W2088638514","https://openalex.org/W2097694646","https://openalex.org/W2110304798","https://openalex.org/W2119493141","https://openalex.org/W2123066271","https://openalex.org/W2130479394","https://openalex.org/W2144476269","https://openalex.org/W2158714788","https://openalex.org/W2168055922","https://openalex.org/W3106930452"],"related_works":["https://openalex.org/W2626999804","https://openalex.org/W4250004941","https://openalex.org/W2137014442","https://openalex.org/W2049015391","https://openalex.org/W1533158771","https://openalex.org/W122082928","https://openalex.org/W2521397622","https://openalex.org/W4294067941","https://openalex.org/W2104288289","https://openalex.org/W2128825190"],"abstract_inverted_index":{"The":[0,22,52,76,102,140,192],"PiRaNhA":[1,53,169,193],"web":[2,97],"server":[3,54,77,170,195],"is":[4,35,196],"a":[5,56,96,125,156,180],"publicly":[6,189],"available":[7,190,198],"online":[8],"resource":[9],"that":[10,42],"automatically":[11],"predicts":[12],"the":[13,30,79,88,118,144,149,168],"location":[14],"of":[15,24,27,32,39,47,81,148,160,174,177,184],"RNA-binding":[16],"residues":[17,134],"(RBRs)":[18],"in":[19,29,107,114,166],"protein":[20,85,162],"sequences.":[21],"goal":[23],"functional":[25],"annotation":[26],"sequences":[28,163],"field":[31],"RNA":[33],"binding":[34],"to":[36,83,130],"provide":[37],"predictions":[38,89],"high":[40],"accuracy":[41,173],"require":[43],"only":[44],"small":[45],"numbers":[46],"targeted":[48],"mutations":[49],"for":[50,90],"verification.":[51],"uses":[55],"support":[57],"vector":[58],"machine":[59],"(SVM),":[60],"with":[61,110,117],"position-specific":[62],"scoring":[63],"matrices,":[64],"residue":[65,69,72],"interface":[66],"propensity,":[67],"predicted":[68,111],"accessibility":[70],"and":[71,87,99,123,179,186],"hydrophobicity":[73],"as":[74,124],"features.":[75],"allows":[78],"submission":[80],"up":[82],"10":[84],"sequences,":[86],"each":[91],"sequence":[92,108],"are":[93,105],"provided":[94,106],"on":[95,155],"page":[98],"via":[100],"email.":[101],"prediction":[103,194],"results":[104],"format":[109,116],"RBRs":[112],"highlighted,":[113],"text":[115],"SVM":[119,138],"threshold":[120],"score":[121],"indicated":[122],"graph":[126,141],"which":[127],"enables":[128,143],"users":[129],"quickly":[131],"identify":[132],"those":[133],"above":[135],"any":[136],"specific":[137],"threshold.":[139],"effectively":[142],"increase":[145],"or":[146],"decrease":[147],"false":[150],"positive":[151],"rate.":[152],"When":[153],"tested":[154],"non-redundant":[157],"data":[158],"set":[159],"42":[161],"not":[164],"used":[165],"training,":[167],"achieved":[171],"an":[172],"85%,":[175],"specificity":[176],"90%":[178],"Matthews":[181],"correlation":[182],"coefficient":[183],"0.41":[185],"outperformed":[187],"other":[188],"servers.":[191],"freely":[197],"at":[199],"http://www.bioinformatics.sussex.ac.uk/PIRANHA.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
