{"id":"https://openalex.org/W2116343015","doi":"https://doi.org/10.1093/nar/gkn303","title":"GEPAS, a web-based tool for microarray data analysis and interpretation","display_name":"GEPAS, a web-based tool for microarray data analysis and interpretation","publication_year":2008,"publication_date":"2008-05-19","ids":{"openalex":"https://openalex.org/W2116343015","doi":"https://doi.org/10.1093/nar/gkn303","mag":"2116343015","pmid":"https://pubmed.ncbi.nlm.nih.gov/18508806"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn303","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W308/7628949/gkn303.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W308/7628949/gkn303.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005495520","display_name":"Joaqu\u00edn T\u00e1rraga","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"J. Tarraga","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler 16, E46013, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler 16, E46013, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068938981","display_name":"Ignacio Medina","orcid":"https://orcid.org/0000-0003-0095-670X"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"I. Medina","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066796940","display_name":"Jos\u00e9 Carbonell\u2010Caballero","orcid":"https://orcid.org/0000-0002-9170-0533"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Carbonell","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050318013","display_name":"Jaime Huerta\u2010Cepas","orcid":"https://orcid.org/0000-0003-4195-5025"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Huerta-Cepas","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028520416","display_name":"Pablo M\u00ednguez","orcid":"https://orcid.org/0000-0003-4099-9421"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"P. Minguez","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090001468","display_name":"Eva Alloza","orcid":"https://orcid.org/0000-0001-8385-9336"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"E. Alloza","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027004121","display_name":"F\u00e1tima Al\u2010Shahrour","orcid":"https://orcid.org/0000-0003-2373-769X"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Al-Shahrour","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002894381","display_name":"Susana Vegas-Azc\u00e1rate","orcid":null},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"S. Vegas-Azcarate","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110020068","display_name":"Stefan Goetz","orcid":null},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"S. Goetz","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111268665","display_name":"P. Escobar","orcid":null},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"P. Escobar","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050320389","display_name":"Francisco Garcia\u2010Garc\u00eda","orcid":"https://orcid.org/0000-0001-8354-5636"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Garcia-Garcia","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":null,"display_name":"A. Conesa","orcid":null},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Conesa","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025099930","display_name":"David Montaner","orcid":"https://orcid.org/0000-0002-2484-3278"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"D. Montaner","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Dopazo","raw_affiliation_strings":["Universidad Carlos III de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5005495520"],"corresponding_institution_ids":["https://openalex.org/I4210165109"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.011,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.94424958,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"36","issue":"Web Server","first_page":"W308","last_page":"W314"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6360323429107666},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.612512469291687},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.5795802474021912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5731087327003479},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5663968324661255},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.5213678479194641},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4964342713356018},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.45784562826156616},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4371339976787567},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.43095847964286804},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3644057512283325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30243760347366333},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.19771236181259155},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.14872688055038452},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10249868035316467},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0909636914730072},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09039682149887085},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07830294966697693}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6360323429107666},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.612512469291687},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.5795802474021912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5731087327003479},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5663968324661255},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.5213678479194641},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4964342713356018},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.45784562826156616},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4371339976787567},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.43095847964286804},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3644057512283325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30243760347366333},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.19771236181259155},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.14872688055038452},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10249868035316467},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0909636914730072},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09039682149887085},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07830294966697693},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn303","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W308/7628949/gkn303.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18508806","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18508806","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2447723","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447723","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn303","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W308/7628949/gkn303.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116343015.pdf","grobid_xml":"https://content.openalex.org/works/W2116343015.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W79377702","https://openalex.org/W1495359568","https://openalex.org/W1496018645","https://openalex.org/W1513910506","https://openalex.org/W1679913846","https://openalex.org/W1748696921","https://openalex.org/W1964895626","https://openalex.org/W1966701961","https://openalex.org/W1970156673","https://openalex.org/W1977556410","https://openalex.org/W1985035274","https://openalex.org/W1987971958","https://openalex.org/W2000771269","https://openalex.org/W2019234246","https://openalex.org/W2021129827","https://openalex.org/W2022520455","https://openalex.org/W2041601223","https://openalex.org/W2049527386","https://openalex.org/W2057217795","https://openalex.org/W2067306349","https://openalex.org/W2092601326","https://openalex.org/W2105559737","https://openalex.org/W2107956883","https://openalex.org/W2109034705","https://openalex.org/W2112783609","https://openalex.org/W2116634113","https://openalex.org/W2116821545","https://openalex.org/W2117812871","https://openalex.org/W2120568877","https://openalex.org/W2121044470","https://openalex.org/W2122863959","https://openalex.org/W2124388496","https://openalex.org/W2126243964","https://openalex.org/W2128985829","https://openalex.org/W2129010206","https://openalex.org/W2131994307","https://openalex.org/W2133098435","https://openalex.org/W2134736660","https://openalex.org/W2137540340","https://openalex.org/W2138550913","https://openalex.org/W2140628921","https://openalex.org/W2141440967","https://openalex.org/W2141703917","https://openalex.org/W2148603752","https://openalex.org/W2149234583","https://openalex.org/W2157795344","https://openalex.org/W2159751674","https://openalex.org/W2160697532","https://openalex.org/W2160842550","https://openalex.org/W3152026761","https://openalex.org/W4206724286","https://openalex.org/W4207034695","https://openalex.org/W4294107304"],"related_works":["https://openalex.org/W1700031991","https://openalex.org/W2037458463","https://openalex.org/W2473769720","https://openalex.org/W2130617689","https://openalex.org/W2110940238","https://openalex.org/W2605786708","https://openalex.org/W2138313377","https://openalex.org/W2014077280","https://openalex.org/W2006956706","https://openalex.org/W4237253796"],"abstract_inverted_index":{"Gene":[0],"Expression":[1],"Profile":[2],"Analysis":[3],"Suite":[4],"(GEPAS)":[5],"is":[6,154,166,188],"one":[7],"of":[8,27,71,104,110,120,130,150,171,182],"the":[9,38,41,72,102,128,156],"most":[10,157],"complete":[11],"and":[12,68,87,133,145,164,174],"extensively":[13,167],"used":[14,168],"web-based":[15],"packages":[16],"for":[17,61,76,90],"microarray":[18,43],"data":[19,44],"analysis.":[20],"During":[21],"its":[22,162,175],"more":[23],"than":[24],"5":[25],"years":[26],"activity":[28],"it":[29,165],"has":[30,122],"continuously":[31],"been":[32,94,123],"updated":[33],"to":[34],"keep":[35],"pace":[36],"with":[37,142],"state-of-the-art":[39],"in":[40,161],"changing":[42],"analysis":[45,50,106],"arena.":[46],"GEPAS":[47,121,153],"offers":[48],"diverse":[49],"options":[51,75],"that":[52],"include":[53],"well":[54,57],"established":[55],"as":[56,58],"novel":[59],"algorithms":[60],"normalization,":[62],"gene":[63,151],"selection,":[64],"class":[65,82],"prediction,":[66,83],"clustering":[67,85],"functional":[69],"profiling":[70],"experiment.":[73],"New":[74],"time-course":[77],"(or":[78],"dose-response)":[79],"experiments,":[80],"microarray-based":[81],"new":[84,88,97,139,147],"methods":[86],"tests":[89],"differential":[91],"expression":[92],"have":[93],"included.":[95],"The":[96],"pipeliner":[98],"module":[99],"allows":[100],"automating":[101],"execution":[103],"sequential":[105],"steps":[107],"by":[108,169],"means":[109],"a":[111,138,146],"simple":[112],"but":[113],"powerful":[114],"graphic":[115],"interface.":[116],"An":[117],"extensive":[118],"re-engineering":[119],"carried":[124],"out":[125],"which":[126],"includes":[127],"use":[129],"web":[131,159],"services":[132],"Web":[134],"2.0":[135],"technology":[136],"features,":[137],"user":[140],"interface":[141],"persistent":[143],"sessions":[144],"extended":[148],"database":[149],"identifiers.":[152],"nowadays":[155],"quoted":[158],"tool":[160],"field":[163],"researchers":[170],"many":[172],"countries":[173],"records":[176],"indicate":[177],"an":[178],"average":[179],"usage":[180],"rate":[181],"500":[183],"experiments":[184],"per":[185],"day.":[186],"GEPAS,":[187],"available":[189],"at":[190],"http://www.gepas.org.":[191]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
