{"id":"https://openalex.org/W2004798786","doi":"https://doi.org/10.1093/nar/gkn180","title":"Phylogeny.fr: robust phylogenetic analysis for the non-specialist","display_name":"Phylogeny.fr: robust phylogenetic analysis for the non-specialist","publication_year":2008,"publication_date":"2008-04-19","ids":{"openalex":"https://openalex.org/W2004798786","doi":"https://doi.org/10.1093/nar/gkn180","mag":"2004798786","pmid":"https://pubmed.ncbi.nlm.nih.gov/18424797"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn180","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W465/7623882/gkn180.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W465/7623882/gkn180.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085749572","display_name":"Alexis Dereeper","orcid":"https://orcid.org/0000-0001-8120-8409"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210157800","display_name":"G\u00e9n\u00e9tique M\u00e9dicale & G\u00e9nomique Fonctionelle","ror":"https://ror.org/04fc8dp24","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210111578","https://openalex.org/I4210157800"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"A. Dereeper","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, France","institution_ids":["https://openalex.org/I4210157800","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045221753","display_name":"Valentin Guignon","orcid":"https://orcid.org/0000-0003-0903-6811"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"V. Guignon","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102023712","display_name":"Guillaume Blanc","orcid":"https://orcid.org/0000-0001-5728-1104"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"G. Blanc","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003525592","display_name":"St\u00e9phane Audic","orcid":"https://orcid.org/0000-0001-6193-4374"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Audic","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090813307","display_name":"Sylvain Buffet","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Buffet","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076387774","display_name":"Fran\u00e7ois Chevenet","orcid":"https://orcid.org/0000-0003-2622-6596"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"F. Chevenet","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034589995","display_name":"Jean-Fran\u00e7ois Dufayard","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J.-F. Dufayard","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079627910","display_name":"St\u00e9phane Guindon","orcid":"https://orcid.org/0000-0002-3665-8096"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Guindon","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088743342","display_name":"Vincent Lefort","orcid":"https://orcid.org/0000-0003-2864-4783"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"V. Lefort","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054300468","display_name":"Magali Lescot","orcid":"https://orcid.org/0000-0001-8189-0823"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M. Lescot","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066530892","display_name":"Jean\u2010Michel Claverie","orcid":"https://orcid.org/0000-0003-1424-0315"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]},{"id":"https://openalex.org/I4387154720","display_name":"Laboratoire Information G\u00e9nomique et Structurale","ror":"https://ror.org/05v0fms67","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4387154720"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J.-M. Claverie","raw_affiliation_strings":["Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Information G\u00e9nomique et Structurale (IGS), CNRS-UPR2589, IFR-88, Marseille, 2 M\u00e9thodes et Algorithmes pour la Bioinformatique (MAB), LIRMM, CNRS \u2013 Univ. Montpellier II and 3 G\u00e9n\u00e9tique et Evolution des Maladies Infectieuses (GEMI), CNRS \u2013 IRD, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I4210166444","https://openalex.org/I1294671590","https://openalex.org/I4210101743","https://openalex.org/I4387154720"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078068308","display_name":"Olivier Gascuel","orcid":"https://orcid.org/0000-0002-9412-9723"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210088322","display_name":"Centre de Gestion Scientifique","ror":"https://ror.org/003y0kg83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12356871","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I190752583","https://openalex.org/I190752583","https://openalex.org/I205703379","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I4210088322","https://openalex.org/I4210091621","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258429","https://openalex.org/I70768539","https://openalex.org/I70768539"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"O. Gascuel","raw_affiliation_strings":["Centre National de la Recherche Scientifique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I4210088322","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5085749572"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210088322","https://openalex.org/I4210157800"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":64.1763,"has_fulltext":false,"cited_by_count":4746,"citation_normalized_percentile":{"value":0.99964072,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"Web Server","first_page":"W465","last_page":"W469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7242499589920044},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6281055808067322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5996003150939941},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5650861859321594},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5167943239212036},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5070891380310059},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.4164675176143646},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37433427572250366},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23139432072639465},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11039647459983826},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08573317527770996},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07922095060348511}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7242499589920044},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6281055808067322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5996003150939941},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5650861859321594},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5167943239212036},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5070891380310059},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.4164675176143646},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37433427572250366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23139432072639465},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11039647459983826},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08573317527770996},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07922095060348511},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkn180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn180","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W465/7623882/gkn180.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18424797","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18424797","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.577.9839","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.577.9839","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal-lirmm.ccsd.cnrs.fr/docs/00/32/40/99/PDF/Phylogeny.fr_NAR_2008.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.954.5220","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.954.5220","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal-lirmm.ccsd.cnrs.fr/lirmm-00324099/document/","raw_type":"text"},{"id":"pmh:oai:HAL:lirmm-00324099v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-00324099","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.phylogeny.fr/","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:2447785","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447785","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn180","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn180","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W465/7623882/gkn180.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2004798786.pdf","grobid_xml":"https://content.openalex.org/works/W2004798786.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1521650410","https://openalex.org/W1867732144","https://openalex.org/W1963957860","https://openalex.org/W1987856282","https://openalex.org/W1996835973","https://openalex.org/W2055043387","https://openalex.org/W2082928585","https://openalex.org/W2094290815","https://openalex.org/W2095319152","https://openalex.org/W2097706568","https://openalex.org/W2098448352","https://openalex.org/W2103546861","https://openalex.org/W2106763642","https://openalex.org/W2106882534","https://openalex.org/W2127122014","https://openalex.org/W2134187096","https://openalex.org/W2144362290","https://openalex.org/W2144654387","https://openalex.org/W2145124523","https://openalex.org/W2148047088","https://openalex.org/W2149057166","https://openalex.org/W2163860567","https://openalex.org/W3199943451","https://openalex.org/W4205911826","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2883025420","https://openalex.org/W2057191541","https://openalex.org/W2949296710","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W2362218761"],"abstract_inverted_index":{"Phylogenetic":[0],"analyses":[1],"are":[2,135],"central":[3],"to":[4,38,74,90,138,146,151,170,206,212,237,241],"many":[5],"research":[6],"areas":[7],"in":[8,52,70,78],"biology":[9],"and":[10,24,81,93,108,118,128,142,183,194],"typically":[11],"involve":[12],"the":[13,21,25,29,58,62,85,160,165,197,247],"identification":[14],"of":[15,28,60,167,204,220],"homologous":[16],"sequences,":[17],"their":[18,76,148,189,208],"multiple":[19,122],"alignment,":[20,123],"phylogenetic":[22,213],"reconstruction":[23],"graphical":[26],"representation":[27],"inferred":[30],"tree.":[31,155],"The":[32,102,156,175],"Phylogeny.fr":[33,97,250],"platform":[34],"transparently":[35],"chains":[36],"programs":[37,114],"automatically":[39],"perform":[40],"these":[41],"tasks.":[42],"It":[43],"is":[44,251],"primarily":[45],"designed":[46],"for":[47,121,125,130,246],"biologists":[48],"with":[49,115],"no":[50],"experience":[51],"phylogeny,":[53],"but":[54,163],"can":[55,187,216],"also":[56,217],"meet":[57],"needs":[59],"specialists;":[61],"first":[63],"ones":[64],"will":[65,87],"find":[66],"up-to-date":[67],"tools":[68,205],"chained":[69],"a":[71,79,110,153,201,221],"phylogeny":[72,248],"pipeline":[73,112,162,191],"analyze":[75],"data":[77],"simple":[80],"robust":[82],"way,":[83],"while":[84],"specialists":[86],"be":[88,171,242],"able":[89],"easily":[91],"build":[92,188],"run":[94],"sophisticated":[95],"analyses.":[96],"offers":[98,180],"three":[99],"main":[100],"modes.":[101],"'One":[103],"Click'":[104],"mode":[105,158,179],"targets":[106],"non-specialists":[107],"provides":[109],"ready-to-use":[111],"chaining":[113],"recognized":[116],"accuracy":[117],"speed:":[119],"MUSCLE":[120],"PhyML":[124],"tree":[126,131,234],"building,":[127],"TreeDyn":[129],"rendering.":[132],"All":[133],"parameters":[134,166],"set":[136],"up":[137,196],"suit":[139,207],"most":[140],"studies,":[141],"users":[143,186,215],"only":[144],"have":[145],"provide":[147],"input":[149,245],"sequences":[150,240],"obtain":[152],"ready-to-print":[154],"'Advanced'":[157],"uses":[159],"same":[161],"allows":[164],"each":[168],"program":[169],"customized":[172],"by":[173,192,224],"users.":[174],"'A":[176],"la":[177],"Carte'":[178],"more":[181],"flexibility":[182],"sophistication,":[184],"as":[185,244],"own":[190],"selecting":[193],"setting":[195],"required":[198],"steps":[199],"from":[200],"large":[202],"choice":[203],"specific":[209],"needs.":[210],"Prior":[211],"analysis,":[214],"collect":[218],"neighbors":[219],"query":[222],"sequence":[223],"running":[225],"BLAST":[226],"on":[227],"general":[228],"or":[229],"specialized":[230],"databases.":[231],"A":[232],"guide":[233],"then":[235],"helps":[236],"select":[238],"neighbor":[239],"used":[243],"pipeline.":[249],"available":[252],"at:":[253],"http://www.phylogeny.fr/":[254]},"counts_by_year":[{"year":2026,"cited_by_count":42},{"year":2025,"cited_by_count":169},{"year":2024,"cited_by_count":194},{"year":2023,"cited_by_count":248},{"year":2022,"cited_by_count":313},{"year":2021,"cited_by_count":333},{"year":2020,"cited_by_count":331},{"year":2019,"cited_by_count":355},{"year":2018,"cited_by_count":358},{"year":2017,"cited_by_count":339},{"year":2016,"cited_by_count":322},{"year":2015,"cited_by_count":349},{"year":2014,"cited_by_count":383},{"year":2013,"cited_by_count":280},{"year":2012,"cited_by_count":263}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
