{"id":"https://openalex.org/W2089691764","doi":"https://doi.org/10.1093/nar/gkm295","title":"VisANT 3.0: new modules for pathway visualization, editing, prediction and construction","display_name":"VisANT 3.0: new modules for pathway visualization, editing, prediction and construction","publication_year":2007,"publication_date":"2007-06-24","ids":{"openalex":"https://openalex.org/W2089691764","doi":"https://doi.org/10.1093/nar/gkm295","mag":"2089691764","pmid":"https://pubmed.ncbi.nlm.nih.gov/17586824"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm295","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkm295","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111956223","display_name":"Zhenjun Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210141612","display_name":"Advanced Genomic Technology (United States)","ror":"https://ror.org/03yk1a741","country_code":"US","type":"company","lineage":["https://openalex.org/I4210141612"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhenjun Hu","raw_affiliation_strings":["Center for Advanced Genomic Technology, Boston University, Boston, MA 02215, USA","Center for Advanced Genomic Technology, Boston University, Boston, MA, 02215, USA"],"affiliations":[{"raw_affiliation_string":"Center for Advanced Genomic Technology, Boston University, Boston, MA 02215, USA","institution_ids":["https://openalex.org/I4210141612","https://openalex.org/I111088046"]},{"raw_affiliation_string":"Center for Advanced Genomic Technology, Boston University, Boston, MA, 02215, USA","institution_ids":["https://openalex.org/I4210141612","https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079884546","display_name":"David Ng","orcid":"https://orcid.org/0000-0001-5436-6380"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David M. Ng","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034753115","display_name":"Takuji Yamada","orcid":"https://orcid.org/0000-0002-9622-1849"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Takuji Yamada","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087751084","display_name":"Chunnuan Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunnuan Chen","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039336067","display_name":"Shuichi Kawashima","orcid":"https://orcid.org/0000-0001-7883-3756"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuichi Kawashima","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074658937","display_name":"Joe Mellor","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joe Mellor","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008536751","display_name":"Bolan Linghu","orcid":"https://orcid.org/0000-0002-2987-1374"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bolan Linghu","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058022821","display_name":"Minoru Kanehisa","orcid":"https://orcid.org/0000-0001-6123-540X"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Minoru Kanehisa","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029096739","display_name":"Joshua M. Stuart","orcid":"https://orcid.org/0000-0002-2171-565X"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua M. Stuart","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027378666","display_name":"Charles DeLisi","orcid":"https://orcid.org/0000-0002-5847-1599"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles DeLisi","raw_affiliation_strings":["University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5111956223"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I4210141612"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.9169,"has_fulltext":false,"cited_by_count":77,"citation_normalized_percentile":{"value":0.97146965,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"35","issue":"suppl_2","first_page":"W625","last_page":"W632"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.8466113209724426},{"id":"https://openalex.org/keywords/scalable-vector-graphics","display_name":"Scalable Vector Graphics","score":0.8290761709213257},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7220373153686523},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.48318472504615784},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4822874367237091},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46390315890312195},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.46028441190719604},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4306853413581848},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.42931488156318665},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32735344767570496},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24132698774337769},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2242538034915924},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21994149684906006},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.17338931560516357},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16386455297470093},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14590638875961304}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.8466113209724426},{"id":"https://openalex.org/C202629362","wikidata":"https://www.wikidata.org/wiki/Q2078","display_name":"Scalable Vector Graphics","level":2,"score":0.8290761709213257},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7220373153686523},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.48318472504615784},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4822874367237091},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46390315890312195},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.46028441190719604},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4306853413581848},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.42931488156318665},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32735344767570496},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24132698774337769},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2242538034915924},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21994149684906006},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.17338931560516357},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16386455297470093},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14590638875961304},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkm295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm295","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17586824","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17586824","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.276.8274","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.276.8274","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/de/c8/Nucleic_Acids_Res_2007_Jul_35(Web_Server_issue)_W625-W632.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.279.1125","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.279.1125","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/de/c8/Nucleic_Acids_Res_2007_Jul_35(Web_Server_issue)_W625-W632.tar.gz","raw_type":"text"},{"id":"pmh:oai:open.bu.edu:2144/3373","is_oa":false,"landing_page_url":"https://hdl.handle.net/2144/3373","pdf_url":null,"source":{"id":"https://openalex.org/S4306402183","display_name":"OpenBU/Boston University Institutional Repository (Boston University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I111088046","host_organization_name":"Boston University","host_organization_lineage":["https://openalex.org/I111088046"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1933155","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933155","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm295","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1588911128","https://openalex.org/W1668625893","https://openalex.org/W1788633327","https://openalex.org/W1946371345","https://openalex.org/W1971425971","https://openalex.org/W2011763462","https://openalex.org/W2018045523","https://openalex.org/W2021239799","https://openalex.org/W2045478141","https://openalex.org/W2050667238","https://openalex.org/W2055718828","https://openalex.org/W2061439657","https://openalex.org/W2084619201","https://openalex.org/W2099007946","https://openalex.org/W2101327327","https://openalex.org/W2108078368","https://openalex.org/W2113310577","https://openalex.org/W2121905803","https://openalex.org/W2136549265","https://openalex.org/W2137970956","https://openalex.org/W2142798246","https://openalex.org/W2142913541","https://openalex.org/W2146384526","https://openalex.org/W2147468287","https://openalex.org/W2147714160","https://openalex.org/W2149209973","https://openalex.org/W2152301738","https://openalex.org/W2152495216","https://openalex.org/W2154362705","https://openalex.org/W2159675211","https://openalex.org/W2160268283","https://openalex.org/W2160540739","https://openalex.org/W2162142896","https://openalex.org/W2165011536","https://openalex.org/W2165674132","https://openalex.org/W2519703809","https://openalex.org/W3085899260","https://openalex.org/W6653242531"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W1980956817","https://openalex.org/W2189613078","https://openalex.org/W2586219255"],"abstract_inverted_index":{"With":[0],"the":[1,4,23,63,149],"integration":[2],"of":[3,44,59,65,101,151],"KEGG":[5,53,91],"and":[6,28,48,57],"Predictome":[7],"databases":[8],"as":[9,11,134],"well":[10],"two":[12],"search":[13],"engines":[14],"for":[15,113],"coexpressed":[16,99],"genes/proteins":[17,114],"using":[18,51,164],"data":[19,61],"sets":[20],"obtained":[21],"from":[22,121],"Stanford":[24],"Microarray":[25],"Database":[26],"(SMD)":[27],"Gene":[29],"Expression":[30,67],"Omnibus":[31],"(GEO)":[32],"database,":[33],"VisANT":[34,130,169],"3.0":[35],"supports":[36],"exploratory":[37],"pathway":[38,103],"analysis,":[39],"which":[40],"includes":[41],"multi-scale":[42],"visualization":[43,58],"multiple":[45],"pathways,":[46],"editing":[47],"annotating":[49],"pathways":[50,92,112],"a":[52,165],"compatible":[54],"visual":[55],"notation":[56],"expression":[60,81],"in":[62,129,148],"context":[64],"pathways.":[66],"levels":[68],"are":[69],"represented":[70],"either":[71,98],"by":[72,76,96],"color":[73],"intensity":[74],"or":[75,88,105,123,141,161],"nodes":[77],"with":[78,107,115],"an":[79,158],"embedded":[80],"profile.":[82],"Multiple":[83],"experiments":[84],"can":[85,93,118,131,153],"be":[86,94,119,132,154],"navigated":[87],"animated.":[89],"Known":[90],"enriched":[95],"querying":[97],"components":[100],"known":[102,108],"members":[104],"proteins":[106],"physical":[109,124],"interactions.":[110],"Predicted":[111],"unknown":[116],"functions":[117],"inferred":[120],"coexpression":[122],"interaction":[125],"data.":[126],"Pathways":[127,147],"produced":[128],"saved":[133],"computer-readable":[135],"XML":[136],"format":[137,150],"(VisML),":[138],"graphic":[139],"images":[140],"high-resolution":[142],"Scalable":[143],"Vector":[144],"Graphics":[145],"(SVG).":[146],"VisML":[152],"securely":[155],"shared":[156],"within":[157],"interested":[159],"group":[160],"published":[162],"online":[163],"simple":[166],"Web":[167],"link.":[168],"is":[170],"freely":[171],"available":[172],"at":[173],"http://visant.bu.edu.":[174]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}