{"id":"https://openalex.org/W2122513531","doi":"https://doi.org/10.1093/nar/gkj070","title":"Megx.net--database resources for marine ecological genomics","display_name":"Megx.net--database resources for marine ecological genomics","publication_year":2005,"publication_date":"2005-12-28","ids":{"openalex":"https://openalex.org/W2122513531","doi":"https://doi.org/10.1093/nar/gkj070","mag":"2122513531","pmid":"https://pubmed.ncbi.nlm.nih.gov/16381894"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkj070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj070","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D390/3924777/gkj070.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D390/3924777/gkj070.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086334945","display_name":"Thierry Lombardot","orcid":"https://orcid.org/0000-0003-4157-0029"},"institutions":[{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"T. Lombardot","raw_affiliation_strings":["Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany"],"affiliations":[{"raw_affiliation_string":"Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5086334945"],"corresponding_institution_ids":["https://openalex.org/I4210103014"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.1209,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.97090204,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"34","issue":"90001","first_page":"D390","last_page":"D393"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9294999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9289268255233765},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6548030972480774},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6313604116439819},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5656054615974426},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44290992617607117},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37440240383148193},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35052037239074707},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3343682289123535},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25663673877716064},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21210038661956787},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17428353428840637}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9289268255233765},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6548030972480774},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6313604116439819},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5656054615974426},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44290992617607117},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37440240383148193},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35052037239074707},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3343682289123535},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25663673877716064},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21210038661956787},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17428353428840637}],"mesh":[{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009792","descriptor_name":"Oceans and Seas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009792","descriptor_name":"Oceans and Seas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009792","descriptor_name":"Oceans and Seas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkj070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj070","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D390/3924777/gkj070.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16381894","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16381894","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:escidoc.org:escidoc:2485647","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0001-CF97-C","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:156885","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1347433","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_2485647","is_oa":true,"landing_page_url":"https://hdl.handle.net/21.11116/0000-0001-CF97-C","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research (London)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkj070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj070","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D390/3924777/gkj070.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.8700000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122513531.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1562379206","https://openalex.org/W1907872891","https://openalex.org/W1971403296","https://openalex.org/W1982713507","https://openalex.org/W2037084529","https://openalex.org/W2044151730","https://openalex.org/W2055043387","https://openalex.org/W2058982051","https://openalex.org/W2081676964","https://openalex.org/W2104454769","https://openalex.org/W2110041134","https://openalex.org/W2113601822","https://openalex.org/W2141885858","https://openalex.org/W3095583226","https://openalex.org/W4210400672","https://openalex.org/W4211022623","https://openalex.org/W4230640326","https://openalex.org/W4236236547","https://openalex.org/W4251079740"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W3044162010"],"abstract_inverted_index":{"Marine":[0],"microbial":[1,68],"genomics":[2],"and":[3,43,63,82,91,102,112,121,126,143,147,174,178,191],"metagenomics":[4,35],"is":[5,49,73],"an":[6,156],"emerging":[7],"field":[8],"in":[9,21,66,129,150],"environmental":[10,131,157],"research.":[11],"Since":[12],"the":[13,16,23,44,67,202],"completion":[14],"of":[15,25,47,70,119,201,204],"first":[17],"marine":[18,28,34,145,205],"bacterial":[19],"genome":[20,158],"2003,":[22],"number":[24,46],"fully":[26],"sequenced":[27],"bacteria":[29],"has":[30],"grown":[31],"rapidly.":[32],"Concurrently,":[33],"studies":[36],"are":[37,98,209],"performed":[38],"on":[39,185],"a":[40,117,136,165,176,198],"regular":[41],"basis,":[42],"resulting":[45],"sequences":[48,128],"growing":[50],"exponentially.":[51],"To":[52],"address":[53],"environmentally":[54],"relevant":[55],"questions":[56],"like":[57,88],"organismal":[58],"adaptations":[59],"to":[60,75,100,140,180,196],"oceanic":[61],"provinces":[62],"regional":[64],"differences":[65],"cycling":[69],"nutrients,":[71],"it":[72],"necessary":[74],"couple":[76],"sequence":[77],"data":[78,104,110,149],"with":[79,85,152,160,167],"geographical":[80],"information":[81,87,138],"supplement":[83],"them":[84],"contextual":[86,153],"physical,":[89],"chemical":[90],"biological":[92],"data.":[93],"Therefore,":[94],"new":[95],"specialized":[96],"databases":[97,120,190],"needed":[99],"organize":[101],"standardize":[103],"storage":[105],"as":[106,108],"well":[107],"centralize":[109],"access":[111],"interpretation.":[113],"We":[114],"introduce":[115],"Megx.net,":[116],"set":[118],"tools":[122],"that":[123],"handle":[124],"genomic":[125,146],"metagenomic":[127,148,182],"their":[130],"contexts.":[132],"Megx.net":[133],"includes":[134],"(i)":[135],"geographic":[137],"system":[139],"systematically":[141],"store":[142],"analyse":[144],"conjunction":[151],"information;":[154],"(ii)":[155],"browser":[159],"fast":[161],"search":[162],"functionalities;":[163],"(iii)":[164],"database":[166,177],"precomputed":[168],"analyses":[169],"for":[170],"selected":[171],"complete":[172],"genomes;":[173],"(iv)":[175],"tool":[179],"classify":[181],"fragments":[183],"based":[184],"oligonucleotide":[186],"signatures.":[187],"These":[188],"integrative":[189],"webserver":[192],"will":[193],"help":[194],"researchers":[195],"generate":[197],"better":[199],"understanding":[200],"functioning":[203],"ecosystems.":[206],"All":[207],"resources":[208],"freely":[210],"accessible":[211],"at":[212],"http://www.megx.net.":[213]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
