{"id":"https://openalex.org/W2103250001","doi":"https://doi.org/10.1093/nar/gkg599","title":"Vienna RNA secondary structure server","display_name":"Vienna RNA secondary structure server","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2103250001","doi":"https://doi.org/10.1093/nar/gkg599","mag":"2103250001","pmid":"https://pubmed.ncbi.nlm.nih.gov/12824340"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg599","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3429/9487514/gkg599.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/13/3429/9487514/gkg599.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011771355","display_name":"Ivo L. Hofacker","orcid":"https://orcid.org/0000-0001-7132-0800"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"I. L. Hofacker","raw_affiliation_strings":["Institut f\u00fcr Theoretische Chemie und Molekulare Strukturbiologie, Universit\u00e4t Wien, W\u00e4hringerstrasse 17, A-1090 Wien, Austria. ivo@tbi.univie.ac.at","Institut f\u00fcr Theoretische Chemie und Molekulare Strukturbiologie, Universit\u00e4t Wien, W\u00e4hringerstrasse 17, A-1090 Wien, Austria"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Theoretische Chemie und Molekulare Strukturbiologie, Universit\u00e4t Wien, W\u00e4hringerstrasse 17, A-1090 Wien, Austria. ivo@tbi.univie.ac.at","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Institut f\u00fcr Theoretische Chemie und Molekulare Strukturbiologie, Universit\u00e4t Wien, W\u00e4hringerstrasse 17, A-1090 Wien, Austria","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5011771355"],"corresponding_institution_ids":["https://openalex.org/I129774422"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":28.253,"has_fulltext":true,"cited_by_count":2381,"citation_normalized_percentile":{"value":0.99870901,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"13","first_page":"3429","last_page":"3431"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.833739161491394},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7683433294296265},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.7505632638931274},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6777600646018982},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.6513499021530151},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5349810123443604},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5264347791671753},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.49650102853775024},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.41274720430374146},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.327581524848938},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2417445182800293},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21691343188285828},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.17071810364723206},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.08555254340171814},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08190411329269409}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.833739161491394},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7683433294296265},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.7505632638931274},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6777600646018982},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.6513499021530151},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5349810123443604},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5264347791671753},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.49650102853775024},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.41274720430374146},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.327581524848938},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2417445182800293},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21691343188285828},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.17071810364723206},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.08555254340171814},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08190411329269409},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkg599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg599","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3429/9487514/gkg599.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12824340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12824340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.3.2544","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.3.2544","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.tbi.univie.ac.at/papers/Abstracts/03-02-001.ps.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.86.516","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.86.516","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://131.130.44.61/papers/Abstracts/03-02-001.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.93.7414","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.93.7414","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-bs.informatik.uni-tuebingen.de/Teaching/Old/WS06/ISB/ISB_Literature/04hofacker03_vienna.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:158857","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC169005","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:169005","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:169005","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/169005","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg599","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3429/9487514/gkg599.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8184292771","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"}],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103250001.pdf","grobid_xml":"https://content.openalex.org/works/W2103250001.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1543796220","https://openalex.org/W1977940795","https://openalex.org/W1984675364","https://openalex.org/W1984987205","https://openalex.org/W2009736453","https://openalex.org/W2009818318","https://openalex.org/W2025763720","https://openalex.org/W2045895660","https://openalex.org/W2117431427","https://openalex.org/W2135995702","https://openalex.org/W2136480416","https://openalex.org/W2138329420","https://openalex.org/W2140651796","https://openalex.org/W2155869782","https://openalex.org/W2166412654","https://openalex.org/W2169239541","https://openalex.org/W3123644304"],"related_works":["https://openalex.org/W1975806245","https://openalex.org/W2558432341","https://openalex.org/W1971402940","https://openalex.org/W2919479895","https://openalex.org/W3047450301","https://openalex.org/W2345156963","https://openalex.org/W2144151678","https://openalex.org/W1998495298","https://openalex.org/W2039746015","https://openalex.org/W2412575231"],"abstract_inverted_index":{"The":[0],"Vienna":[1,18,72],"RNA":[2,19,26,73],"secondary":[3,27,34,44],"structure":[4,35,45],"server":[5,75],"provides":[6],"a":[7,37,47,61],"web":[8,74],"interface":[9],"to":[10],"the":[11,17,23,42,53,71],"most":[12],"frequently":[13],"used":[14],"functions":[15],"of":[16,25,33,41,49,55],"software":[20],"package":[21],"for":[22,46],"analysis":[24],"structures.":[28],"It":[29],"currently":[30],"offers":[31],"prediction":[32,40],"from":[36],"single":[38],"sequence,":[39],"consensus":[43],"set":[48],"aligned":[50],"sequences":[51,56],"and":[52],"design":[54],"that":[57],"will":[58],"fold":[59],"into":[60],"predefined":[62],"structure.":[63],"All":[64],"three":[65],"services":[66],"can":[67],"be":[68],"accessed":[69],"via":[70],"at":[76],"http://rna.tbi.univie.ac.at/.":[77]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":67},{"year":2024,"cited_by_count":85},{"year":2023,"cited_by_count":84},{"year":2022,"cited_by_count":96},{"year":2021,"cited_by_count":112},{"year":2020,"cited_by_count":100},{"year":2019,"cited_by_count":92},{"year":2018,"cited_by_count":93},{"year":2017,"cited_by_count":80},{"year":2016,"cited_by_count":101},{"year":2015,"cited_by_count":113},{"year":2014,"cited_by_count":130},{"year":2013,"cited_by_count":140},{"year":2012,"cited_by_count":162}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
