{"id":"https://openalex.org/W2091705944","doi":"https://doi.org/10.1093/nar/gkg529","title":"Tools for the automatic identification and classification of RNA base pairs","display_name":"Tools for the automatic identification and classification of RNA base pairs","publication_year":2003,"publication_date":"2003-06-24","ids":{"openalex":"https://openalex.org/W2091705944","doi":"https://doi.org/10.1093/nar/gkg529","mag":"2091705944","pmid":"https://pubmed.ncbi.nlm.nih.gov/12824344"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg529","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3450/9487193/gkg529.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/13/3450/9487193/gkg529.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112252712","display_name":"Huanwang Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4210096112","display_name":"Rutgers Sexual and Reproductive Health and Rights","ror":"https://ror.org/00rcvgx40","country_code":"NL","type":"other","lineage":["https://openalex.org/I4210096112"]}],"countries":["NL","US"],"is_corresponding":true,"raw_author_name":"H. Yang","raw_affiliation_strings":["Department of Chemistry and Chemical Biology, Rutgers University, NJ 08854-8087, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, Rutgers University, NJ 08854-8087, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4210096112"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5112252712"],"corresponding_institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4210096112"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":3.4673,"has_fulltext":true,"cited_by_count":302,"citation_normalized_percentile":{"value":0.93410696,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"31","issue":"13","first_page":"3450","last_page":"3460"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6281641721725464},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6012483835220337},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.5832833051681519},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5751937627792358},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.5308493375778198},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4551198482513428},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4550855755805969},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4272545874118805},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41823694109916687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3733997642993927},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3529040515422821},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.344893217086792},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23138028383255005},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21931448578834534},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15935149788856506},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13450965285301208},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.09944140911102295}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6281641721725464},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6012483835220337},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.5832833051681519},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5751937627792358},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.5308493375778198},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4551198482513428},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4550855755805969},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4272545874118805},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41823694109916687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3733997642993927},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3529040515422821},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.344893217086792},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23138028383255005},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21931448578834534},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15935149788856506},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13450965285301208},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.09944140911102295},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkg529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg529","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3450/9487193/gkg529.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12824344","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12824344","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:scholarworks.bgsu.edu:chem_pub-1018","is_oa":false,"landing_page_url":"https://scholarworks.bgsu.edu/chem_pub/3","pdf_url":null,"source":{"id":"https://openalex.org/S4306402596","display_name":"ScholarWorks@BGSU (Bowling Green State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157417397","host_organization_name":"Bowling Green State University","host_organization_lineage":["https://openalex.org/I157417397"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Chemistry Faculty Publications","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.631.347","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.631.347","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/31/13/3450.full.pdf","raw_type":"text"},{"id":"pmh:oai:alma.01RUT_INST:11665137960004646","is_oa":false,"landing_page_url":"https://scholarship.libraries.rutgers.edu/esploro/outputs/journalArticle/Tools-for-the-automatic-identification-and/991031665969504646","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:168936","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:168936","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/168936","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg529","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg529","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3450/9487193/gkg529.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5476010879","display_name":null,"funder_award_id":"2R15 GM55898","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G612472083","display_name":null,"funder_award_id":"R15 GM055898","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8930778530","display_name":null,"funder_award_id":"2R15 GM55898","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320322893","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2091705944.pdf","grobid_xml":"https://content.openalex.org/works/W2091705944.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W280694366","https://openalex.org/W1480821243","https://openalex.org/W1533059251","https://openalex.org/W1597533137","https://openalex.org/W1814377200","https://openalex.org/W1881326155","https://openalex.org/W1906619597","https://openalex.org/W1910105166","https://openalex.org/W1966041739","https://openalex.org/W1967476444","https://openalex.org/W1971809659","https://openalex.org/W1976681078","https://openalex.org/W1977287926","https://openalex.org/W1977608471","https://openalex.org/W1980461282","https://openalex.org/W1987393362","https://openalex.org/W1993926172","https://openalex.org/W2003122343","https://openalex.org/W2007618885","https://openalex.org/W2009206457","https://openalex.org/W2012839376","https://openalex.org/W2019832209","https://openalex.org/W2026389832","https://openalex.org/W2038545035","https://openalex.org/W2039282510","https://openalex.org/W2042217359","https://openalex.org/W2047518536","https://openalex.org/W2055466584","https://openalex.org/W2058334701","https://openalex.org/W2060250925","https://openalex.org/W2069348762","https://openalex.org/W2081125994","https://openalex.org/W2093519548","https://openalex.org/W2095249676","https://openalex.org/W2097335018","https://openalex.org/W2098276437","https://openalex.org/W2099029772","https://openalex.org/W2100380699","https://openalex.org/W2104395994","https://openalex.org/W2106478835","https://openalex.org/W2109526373","https://openalex.org/W2110821985","https://openalex.org/W2114972602","https://openalex.org/W2115729502","https://openalex.org/W2122602899","https://openalex.org/W2126780661","https://openalex.org/W2130479394","https://openalex.org/W2131457029","https://openalex.org/W2132129663","https://openalex.org/W2136480416","https://openalex.org/W2146357275","https://openalex.org/W2155283071","https://openalex.org/W2155376412","https://openalex.org/W2158073100","https://openalex.org/W2163076661","https://openalex.org/W2165165230","https://openalex.org/W2167038708","https://openalex.org/W2395762849","https://openalex.org/W4386656220"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2156434174","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W2294221496"],"abstract_inverted_index":{"Three":[0],"programs":[1],"have":[2],"been":[3,164],"developed":[4],"to":[5,89,98],"aid":[6],"in":[7,49,76,259],"the":[8,41,57,63,94,104,114,127,141,145,150,173,179,188,195,198,213,260],"classification":[9],"and":[10,39,62,73,133,149,159,184,204,232],"visualization":[11,211],"of":[12,25,43,56,71,93,107,129,181,185,187,197,212],"RNA":[13,130,154,257],"structure.":[14],"BPViewer":[15,231],"provides":[16],"a":[17,100,219],"web":[18,34,228],"interface":[19],"for":[20,167,178,194,210,224,230,256],"displaying":[21],"three-dimensional":[22],"(3D)":[23],"coordinates":[24],"individual":[26],"base":[27,30,44,146,214,225],"pairs":[28,45],"or":[29,80,109],"pair":[31,147,215],"collections.":[32],"A":[33,116,161],"server,":[35],"RNAview,":[36],"automatically":[37],"identifies":[38],"classifies":[40],"types":[42],"that":[46],"are":[47,136,156,192,234,254],"formed":[48],"nucleic":[50],"acid":[51],"structures":[52,170,258],"by":[53,113,217,252],"various":[54,91],"combinations":[55,196],"three":[58],"edges,":[59],"Watson-Crick,":[60],"Hoogsteen":[61],"Sugar":[64],"edge.":[65],"RNAView":[66,95],"produces":[67],"two-dimensional":[68],"(2D)":[69],"diagrams":[70,250],"secondary":[72],"tertiary":[74],"structure":[75,106],"either":[77],"Postscript,":[78],"VRML":[79],"RNAML":[81],"formats.":[82],"The":[83,176,206,227,238,248],"application":[84,239],"RNAMLview":[85,124,240],"can":[86,119,241],"be":[87,120,243],"used":[88],"rearrange":[90],"parts":[92,128],"2D":[96,117,151,249],"diagram":[97,118],"generate":[99],"standard":[101],"representation":[102],"(like":[103,131],"cloverleaf":[105],"tRNAs)":[108],"any":[110],"layout":[111],"desired":[112],"user.":[115],"rapidly":[121,157],"reformatted":[122],"using":[123,218],"since":[125],"all":[126],"helices":[132],"single":[134],"strands)":[135],"dynamically":[137],"linked":[138],"while":[139],"moving":[140],"selected":[142,171],"parts.":[143],"With":[144],"annotation":[148],"graphic":[152],"display,":[153],"motifs":[155],"identified":[158],"classified.":[160],"survey":[162],"has":[163],"carried":[165],"out":[166],"41":[168],"unique":[169],"from":[172,245],"NDB":[174],"database.":[175],"statistics":[177],"occurrence":[180],"each":[182,186],"edge":[183],"12":[189],"bp":[190],"families":[191],"given":[193],"four":[199],"bases:":[200],"A,":[201],"G,":[202],"U":[203],"C.":[205],"program":[207],"also":[208,242],"allows":[209],"interactions":[216],"symbolic":[220],"convention":[221],"previously":[222],"proposed":[223],"pairs.":[226],"servers":[229],"RNAview":[233,253],"available":[235,255],"at":[236,265],"http://ndbserver.rutgers.edu/services/.":[237],"downloaded":[244],"this":[246],"site.":[247],"produced":[251],"Nucleic":[261],"Acid":[262],"Database":[263],"(NDB)":[264],"http://ndbserver.rutgers.edu/atlas/.":[266]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":24},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":20}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
