{"id":"https://openalex.org/W4372332501","doi":"https://doi.org/10.1093/nar/gkad347","title":"g:Profiler\u2014interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)","display_name":"g:Profiler\u2014interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)","publication_year":2023,"publication_date":"2023-05-05","ids":{"openalex":"https://openalex.org/W4372332501","doi":"https://doi.org/10.1093/nar/gkad347","pmid":"https://pubmed.ncbi.nlm.nih.gov/37144459"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad347","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad347/50211330/gkad347.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad347/50211330/gkad347.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089817039","display_name":"Liis Kolberg","orcid":"https://orcid.org/0000-0002-0118-7562"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Liis Kolberg","raw_affiliation_strings":["Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia"],"raw_orcid":"https://orcid.org/0000-0002-0118-7562","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088048706","display_name":"Uku Raudvere","orcid":"https://orcid.org/0000-0001-7243-8595"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Uku Raudvere","raw_affiliation_strings":["Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia"],"raw_orcid":"https://orcid.org/0000-0001-7243-8595","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090064487","display_name":"Ivan Kuzmin","orcid":"https://orcid.org/0000-0001-9138-9901"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Ivan Kuzmin","raw_affiliation_strings":["Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia"],"raw_orcid":"https://orcid.org/0000-0001-9138-9901","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059318987","display_name":"Priit Adler","orcid":"https://orcid.org/0000-0001-8276-5135"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Priit Adler","raw_affiliation_strings":["Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia"],"raw_orcid":"https://orcid.org/0000-0001-8276-5135","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011429527","display_name":"Jaak Vilo","orcid":"https://orcid.org/0000-0001-5604-4107"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Jaak Vilo","raw_affiliation_strings":["Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia","Software Technology and Applications Competence Center , Narva mnt 20, 51009 Tartu, Estonia"],"raw_orcid":"https://orcid.org/0000-0001-5604-4107","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Software Technology and Applications Competence Center , Narva mnt 20, 51009 Tartu, Estonia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089890429","display_name":"Hedi Peterson","orcid":"https://orcid.org/0000-0001-9951-5116"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Hedi Peterson","raw_affiliation_strings":["Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia"],"raw_orcid":"https://orcid.org/0000-0001-9951-5116","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of Tartu , Narva mnt 18, 51009 Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":226.6926,"has_fulltext":true,"cited_by_count":1571,"citation_normalized_percentile":{"value":0.99995798,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"51","issue":"W1","first_page":"W207","last_page":"W212"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9072925448417664},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7515835165977478},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.667008101940155},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.5609360337257385},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.544857919216156},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40927013754844666},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37356603145599365},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36462467908859253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12810611724853516},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.07763835787773132}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9072925448417664},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7515835165977478},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.667008101940155},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.5609360337257385},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.544857919216156},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40927013754844666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37356603145599365},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36462467908859253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12810611724853516},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.07763835787773132},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad347","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad347/50211330/gkad347.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37144459","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37144459","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320099","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320099","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320099/pdf/gkad347.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad347","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad347/50211330/gkad347.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2697670400","display_name":null,"funder_award_id":"2014-2020.4.01.16-0271","funder_id":"https://openalex.org/F4320321090","funder_display_name":"Eesti Teadusagentuur"},{"id":"https://openalex.org/G4898532384","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320321090","funder_display_name":"Eesti Teadusagentuur"},{"id":"https://openalex.org/G5634946813","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6107285702","display_name":null,"funder_award_id":"2014-2020.4.01.16-0271","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8647006826","display_name":null,"funder_award_id":"PRG1844","funder_id":"https://openalex.org/F4320321090","funder_display_name":"Eesti Teadusagentuur"}],"funders":[{"id":"https://openalex.org/F4320321090","display_name":"Eesti Teadusagentuur","ror":"https://ror.org/00jjeja18"},{"id":"https://openalex.org/F4320324717","display_name":"Tartu \u00dclikool","ror":"https://ror.org/03z77qz90"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4372332501.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W2012034410","https://openalex.org/W2016106370","https://openalex.org/W2061674320","https://openalex.org/W2103017472","https://openalex.org/W2124954099","https://openalex.org/W2179282661","https://openalex.org/W2214074259","https://openalex.org/W2517051411","https://openalex.org/W2559577985","https://openalex.org/W2944545583","https://openalex.org/W2946173685","https://openalex.org/W2947990714","https://openalex.org/W3042896257","https://openalex.org/W3102147110","https://openalex.org/W3106811464","https://openalex.org/W3110917833","https://openalex.org/W3112600195","https://openalex.org/W3145969289","https://openalex.org/W3175752499","https://openalex.org/W3211402536","https://openalex.org/W3213171917","https://openalex.org/W4200043367","https://openalex.org/W4200135473","https://openalex.org/W4220684489","https://openalex.org/W4220831425","https://openalex.org/W4226051960","https://openalex.org/W4242856680","https://openalex.org/W4307425304","https://openalex.org/W4309161067","https://openalex.org/W6797786779"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W4378651134","https://openalex.org/W4312626803","https://openalex.org/W2123131699","https://openalex.org/W650116260","https://openalex.org/W2378329187","https://openalex.org/W4390790060","https://openalex.org/W2134191509","https://openalex.org/W3209454962","https://openalex.org/W79697243"],"abstract_inverted_index":{"g:Profiler":[0,59,92,123,183],"is":[1,99,195],"a":[2,32,150,165,174,185],"reliable":[3],"and":[4,17,28,34,44,48,52,76,98,108,132,134,178,191],"up-to-date":[5],"functional":[6],"enrichment":[7,176],"analysis":[8,36,177],"tool":[9],"that":[10],"supports":[11,49,124],"various":[12],"evidence":[13],"types,":[14],"identifier":[15],"types":[16],"organisms.":[18],"The":[19],"toolset":[20],"integrates":[21],"many":[22],"databases,":[23],"including":[24,127],"Gene":[25,155,170],"Ontology,":[26],"KEGG":[27],"TRANSFAC,":[29],"to":[30,64,87,101],"provide":[31],"comprehensive":[33],"in-depth":[35],"of":[37,104,116],"gene":[38,179],"lists.":[39],"It":[40,194],"also":[41],"provides":[42,60],"interactive":[43],"intuitive":[45],"user":[46],"interfaces":[47,63],"ordered":[50],"queries":[51],"custom":[53,74,141],"statistical":[54],"backgrounds,":[55],"among":[56],"other":[57],"settings.":[58],"multiple":[61],"programmatic":[62],"access":[65],"its":[66],"functionality.":[67],"These":[68],"can":[69,135],"be":[70],"easily":[71],"integrated":[72],"into":[73],"workflows":[75],"external":[77],"tools,":[78],"making":[79],"them":[80],"valuable":[81,186],"resources":[82],"for":[83,168,188],"researchers":[84],"who":[85],"want":[86],"develop":[88],"their":[89],"own":[90],"solutions.":[91],"has":[93],"been":[94],"available":[95],"since":[96,121],"2007":[97],"used":[100],"analyse":[102,136],"millions":[103],"queries.":[105],"Research":[106],"reproducibility":[107],"transparency":[109],"are":[110],"achieved":[111],"by":[112,160],"maintaining":[113],"working":[114],"versions":[115],"all":[117],"past":[118],"database":[119],"releases":[120],"2015.":[122],"849":[125],"species,":[126],"vertebrates,":[128],"plants,":[129],"fungi,":[130],"insects":[131],"parasites,":[133],"any":[137],"organism":[138],"through":[139],"user-uploaded":[140],"annotation":[142],"files.":[143],"In":[144],"this":[145],"update":[146],"article,":[147],"we":[148],"introduce":[149],"novel":[151],"filtering":[152],"method":[153],"highlighting":[154],"Ontology":[156,171],"driver":[157],"terms,":[158],"accompanied":[159],"new":[161],"graph":[162],"visualizations":[163],"providing":[164],"broader":[166],"context":[167],"significant":[169],"terms.":[172],"As":[173],"leading":[175],"list":[180],"interoperability":[181],"service,":[182],"offers":[184],"resource":[187],"genetics,":[189],"biology":[190],"medical":[192],"researchers.":[193],"freely":[196],"accessible":[197],"at":[198],"https://biit.cs.ut.ee/gprofiler.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":289},{"year":2025,"cited_by_count":777},{"year":2024,"cited_by_count":474},{"year":2023,"cited_by_count":29},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-13T07:54:00.901334","created_date":"2025-10-10T00:00:00"}
