{"id":"https://openalex.org/W3165195607","doi":"https://doi.org/10.1093/nar/gkab427","title":"pegIT -\u00a0a web-based design tool for prime editing","display_name":"pegIT -\u00a0a web-based design tool for prime editing","publication_year":2021,"publication_date":"2021-05-12","ids":{"openalex":"https://openalex.org/W3165195607","doi":"https://doi.org/10.1093/nar/gkab427","mag":"3165195607","pmid":"https://pubmed.ncbi.nlm.nih.gov/34060619"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab427","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W505/38842181/gkab427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W505/38842181/gkab427.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009861247","display_name":"Mads Valdemar Anderson","orcid":"https://orcid.org/0000-0002-6217-1353"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Mads Valdemar Anderson","raw_affiliation_strings":["Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark"],"raw_orcid":"https://orcid.org/0000-0002-6217-1353","affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark","institution_ids":["https://openalex.org/I204337017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023870761","display_name":"Jakob Haldrup","orcid":"https://orcid.org/0000-0002-2208-5952"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jakob Haldrup","raw_affiliation_strings":["Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark","institution_ids":["https://openalex.org/I204337017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076460713","display_name":"Emil Aagaard Thomsen","orcid":"https://orcid.org/0000-0002-2685-7745"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Emil Aagaard Thomsen","raw_affiliation_strings":["Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark","institution_ids":["https://openalex.org/I204337017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067903743","display_name":"Jonas Holst Wolff","orcid":"https://orcid.org/0000-0001-5690-7603"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jonas\u00a0Holst Wolff","raw_affiliation_strings":["Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark","institution_ids":["https://openalex.org/I204337017"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082099200","display_name":"Jacob Giehm Mikkelsen","orcid":"https://orcid.org/0000-0002-1322-3209"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Jacob\u00a0Giehm Mikkelsen","raw_affiliation_strings":["Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark"],"raw_orcid":"https://orcid.org/0000-0002-1322-3209","affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Aarhus University, Aarhus C, 8000, Denmark","institution_ids":["https://openalex.org/I204337017"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009861247","https://openalex.org/A5082099200"],"corresponding_institution_ids":["https://openalex.org/I204337017"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.0132,"has_fulltext":false,"cited_by_count":51,"citation_normalized_percentile":{"value":0.9257936,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"49","issue":"W1","first_page":"W505","last_page":"W509"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12786","display_name":"Innovation and Socioeconomic Development","score":0.940500020980835,"subfield":{"id":"https://openalex.org/subfields/1403","display_name":"Business and International Management"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.938998281955719},{"id":"https://openalex.org/keywords/prime","display_name":"Prime (order theory)","score":0.5488888621330261},{"id":"https://openalex.org/keywords/genome-editing","display_name":"Genome editing","score":0.4731760323047638},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4274557828903198},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36177557706832886},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2954024076461792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1563113033771515},{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.15166354179382324}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.938998281955719},{"id":"https://openalex.org/C184992742","wikidata":"https://www.wikidata.org/wiki/Q7243229","display_name":"Prime (order theory)","level":2,"score":0.5488888621330261},{"id":"https://openalex.org/C144501496","wikidata":"https://www.wikidata.org/wiki/Q5533489","display_name":"Genome editing","level":4,"score":0.4731760323047638},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4274557828903198},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36177557706832886},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2954024076461792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1563113033771515},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.15166354179382324},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000076987","descriptor_name":"CRISPR-Associated Protein 9","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000076987","descriptor_name":"CRISPR-Associated Protein 9","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000076987","descriptor_name":"CRISPR-Associated Protein 9","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011993","descriptor_name":"Recombinant Fusion Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011993","descriptor_name":"Recombinant Fusion Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011993","descriptor_name":"Recombinant Fusion Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012194","descriptor_name":"RNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012194","descriptor_name":"RNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012194","descriptor_name":"RNA-Directed DNA Polymerase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkab427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab427","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W505/38842181/gkab427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34060619","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34060619","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8265180","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8265180","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire/4d855d3d-f3cf-49d3-ab33-ed1d7b0c1444","is_oa":true,"landing_page_url":"https://pure.au.dk/portal/en/publications/4d855d3d-f3cf-49d3-ab33-ed1d7b0c1444","pdf_url":null,"source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Anderson, M V, Haldrup, J, Thomsen, E A, Wolff, J H & Mikkelsen, J G 2021, 'PegIT - A web-based design tool for prime editing', Nucleic Acids Research, vol. 49, no. W1, pp. W505-W509. https://doi.org/10.1093/nar/gkab427","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/4d855d3d-f3cf-49d3-ab33-ed1d7b0c1444","is_oa":false,"landing_page_url":"http://www.scopus.com/inward/record.url?scp=85110301888&partnerID=8YFLogxK","pdf_url":null,"source":{"id":"https://openalex.org/S4306400063","display_name":"Scopus (Elsevier)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Anderson, M V, Haldrup, J, Thomsen, E A, Wolff, J H & Mikkelsen, J G 2021, 'PegIT - A web-based design tool for prime editing', Nucleic Acids Research, vol. 49, no. W1, pp. W505-W509. https://doi.org/10.1093/nar/gkab427","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab427","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W505/38842181/gkab427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4300000071525574,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G5697768123","display_name":null,"funder_award_id":"R230-2016-2986","funder_id":"https://openalex.org/F4320321999","funder_display_name":"Lundbeckfonden"},{"id":"https://openalex.org/G5743396092","display_name":null,"funder_award_id":"R324-2019-1832","funder_id":"https://openalex.org/F4320321999","funder_display_name":"Lundbeckfonden"},{"id":"https://openalex.org/G8100124835","display_name":null,"funder_award_id":"R233-2016-2987","funder_id":"https://openalex.org/F4320321999","funder_display_name":"Lundbeckfonden"}],"funders":[{"id":"https://openalex.org/F4320309928","display_name":"Aarhus Universitet","ror":"https://ror.org/01aj84f44"},{"id":"https://openalex.org/F4320321999","display_name":"Lundbeckfonden","ror":"https://ror.org/03hz8wd80"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1973260880","https://openalex.org/W1977709885","https://openalex.org/W2003171404","https://openalex.org/W2045435533","https://openalex.org/W2064815984","https://openalex.org/W2108871359","https://openalex.org/W2114850508","https://openalex.org/W2124985265","https://openalex.org/W2153344788","https://openalex.org/W2162098634","https://openalex.org/W2252568502","https://openalex.org/W2897295193","https://openalex.org/W2955231772","https://openalex.org/W2981137429","https://openalex.org/W3012016445","https://openalex.org/W3020732568","https://openalex.org/W3043143974","https://openalex.org/W3043719325","https://openalex.org/W3089756407","https://openalex.org/W3131093799"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191"],"abstract_inverted_index":{"Prime":[0],"editing":[1,8,12,30],"(PE)":[2],"is":[3,25,54,85],"a":[4,20,55,69],"novel":[5],"CRISPR-derived":[6],"genome":[7],"technique":[9],"facilitating":[10],"precision":[11],"without":[13],"double-stranded":[14],"DNA":[15],"breaks.":[16],"PE,":[17],"mediated":[18],"by":[19],"Cas9-reverse":[21],"transcriptase":[22],"fusion":[23],"protein,":[24],"based":[26],"on":[27],"dual-functioning":[28],"prime":[29],"guide":[31,37],"RNAs":[32],"(pegRNAs),":[33],"serving":[34],"both":[35],"as":[36,40],"molecules":[38],"and":[39,59],"templates":[41],"carrying":[42],"the":[43],"desired":[44],"edits.":[45],"Due":[46],"to":[47,57],"such":[48],"diverse":[49],"functions,":[50],"manual":[51],"pegRNA":[52,75],"design":[53,76],"subject":[56],"error":[58],"not":[60],"suited":[61],"for":[62,73,77],"large-scale":[63,82],"setups.":[64,83],"Here,":[65],"we":[66],"present":[67],"pegIT,":[68],"user-friendly":[70],"web":[71],"tool":[72],"rapid":[74],"numerous":[78],"user-defined":[79],"edits,":[80],"including":[81],"pegIT":[84],"freely":[86],"available":[87],"at":[88],"https://pegit.giehmlab.dk.":[89]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":4}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
