{"id":"https://openalex.org/W2103425480","doi":"https://doi.org/10.1093/nar/28.1.41","title":"The Protein Information Resource (PIR)","display_name":"The Protein Information Resource (PIR)","publication_year":2000,"publication_date":"2000-01-01","ids":{"openalex":"https://openalex.org/W2103425480","doi":"https://doi.org/10.1093/nar/28.1.41","mag":"2103425480","pmid":"https://pubmed.ncbi.nlm.nih.gov/10592177"},"language":"en","primary_location":{"id":"doi:10.1093/nar/28.1.41","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/28.1.41","pdf_url":"https://academic.oup.com/nar/article-pdf/28/1/41/9895196/280041.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/28/1/41/9895196/280041.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059783115","display_name":"Winona C. Barker","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112961","display_name":"Biomedical Research Foundation","ror":"https://ror.org/022jjvb64","country_code":"US","type":"other","lineage":["https://openalex.org/I4210112961"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"W. C. Barker","raw_affiliation_strings":["Protein Information Resource, National Biomedical Research Foundation, 3900 Reservoir Road, NW, Washington, DC 20007, USA. pirmail@nbrf.georgetown.edu","Protein Information Resource, National Biomedical Research Foundation, 3900 Reservoir Road, NW, Washington, DC 20007, USA"],"affiliations":[{"raw_affiliation_string":"Protein Information Resource, National Biomedical Research Foundation, 3900 Reservoir Road, NW, Washington, DC 20007, USA. pirmail@nbrf.georgetown.edu","institution_ids":["https://openalex.org/I4210112961"]},{"raw_affiliation_string":"Protein Information Resource, National Biomedical Research Foundation, 3900 Reservoir Road, NW, Washington, DC 20007, USA","institution_ids":["https://openalex.org/I4210112961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5059783115"],"corresponding_institution_ids":["https://openalex.org/I4210112961"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":9.8114,"has_fulltext":false,"cited_by_count":208,"citation_normalized_percentile":{"value":0.98775864,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"28","issue":"1","first_page":"41","last_page":"44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6814448833465576},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.6426541209220886},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5942783355712891},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5821294188499451},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.53725266456604},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5186699628829956},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4799485504627228},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4622810184955597},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45189738273620605},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.44389608502388},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4409111738204956},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.4320324957370758},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4222787320613861},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4128798842430115},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37210047245025635},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3096849322319031},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.301302433013916},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27336353063583374},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.25417599081993103},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24195349216461182},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2287362813949585},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13794511556625366}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6814448833465576},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.6426541209220886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5942783355712891},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5821294188499451},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.53725266456604},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5186699628829956},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4799485504627228},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4622810184955597},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45189738273620605},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.44389608502388},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4409111738204956},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.4320324957370758},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4222787320613861},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4128798842430115},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37210047245025635},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3096849322319031},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.301302433013916},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27336353063583374},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.25417599081993103},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24195349216461182},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2287362813949585},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13794511556625366},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/28.1.41","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/28.1.41","pdf_url":"https://academic.oup.com/nar/article-pdf/28/1/41/9895196/280041.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:10592177","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/10592177","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:102418","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:102418","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/102418","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/28.1.41","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/28.1.41","pdf_url":"https://academic.oup.com/nar/article-pdf/28/1/41/9895196/280041.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103425480.pdf","grobid_xml":"https://content.openalex.org/works/W2103425480.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W199139409","https://openalex.org/W1493206838","https://openalex.org/W1666201796","https://openalex.org/W1999648939","https://openalex.org/W2015292449","https://openalex.org/W2106882534","https://openalex.org/W2124563802","https://openalex.org/W2137786672","https://openalex.org/W2145023186","https://openalex.org/W2153485297","https://openalex.org/W2154132000","https://openalex.org/W2158714788","https://openalex.org/W2162171603","https://openalex.org/W2601913882","https://openalex.org/W4234937118"],"related_works":["https://openalex.org/W2036521446","https://openalex.org/W2105364679","https://openalex.org/W2062123785","https://openalex.org/W2022667872","https://openalex.org/W2103210188","https://openalex.org/W2926533301","https://openalex.org/W2099254366","https://openalex.org/W2062821270","https://openalex.org/W1969436613","https://openalex.org/W2135912076"],"abstract_inverted_index":{"The":[0,42,105,129],"Protein":[1,20,31,38,55,131],"Information":[2,28],"Resource":[3],"(PIR)":[4],"produces":[5],"the":[6,15,18,26,35,54,76,87,114,122],"largest,":[7],"most":[8],"comprehensive,":[9],"annotated":[10],"protein":[11],"sequence":[12,48,69,89],"database":[13,72],"in":[14,23],"public":[16],"domain,":[17],"PIR-International":[19,106,130],"Sequence":[21,39,56,132],"Database,":[22],"collaboration":[24],"with":[25],"Munich":[27],"Center":[29],"for":[30,85],"Sequences":[32],"(MIPS)":[33],"and":[34,50,58,71,78,98,101,108,120,134],"Japan":[36],"International":[37],"Database":[40,57,133],"(JIPID).":[41],"expanded":[43],"PIR":[44,88,115],"WWW":[45,116,124],"site":[46,117,125],"allows":[47],"similarity":[49,70],"text":[51,103],"searching":[52,86],"of":[53,68,81],"auxiliary":[59],"databases.":[60],"Several":[61],"new":[62],"web-based":[63],"search":[64,109],"engines":[65],"combine":[66],"searches":[67],"annotation":[73],"to":[74],"facilitate":[75],"analysis":[77],"functional":[79],"identification":[80],"proteins.":[82],"New":[83],"capabilities":[84],"databases":[90,107],"include":[91],"annotation-sorted":[92],"search,":[93,95,100],"domain":[94,99],"combined":[96],"global":[97],"interactive":[102],"searches.":[104],"tools":[110],"are":[111,137],"accessible":[112],"on":[113],"at":[118,121,126],"http://pir.georgetown.edu":[119],"MIPS":[123],"http://www.":[127],"mips.biochem.mpg.de.":[128],"other":[135],"files":[136],"also":[138],"available":[139],"by":[140],"FTP.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
