{"id":"https://openalex.org/W1968825194","doi":"https://doi.org/10.1093/nar/14.1.583","title":"Fast analysis of DNA and protein sequence on Apple IIe: restriction sites search, alignment of short sequence and dot matrix analysis","display_name":"Fast analysis of DNA and protein sequence on Apple IIe: restriction sites search, alignment of short sequence and dot matrix analysis","publication_year":1986,"publication_date":"1986-01-01","ids":{"openalex":"https://openalex.org/W1968825194","doi":"https://doi.org/10.1093/nar/14.1.583","mag":"1968825194","pmid":"https://pubmed.ncbi.nlm.nih.gov/3003684"},"language":"en","primary_location":{"id":"doi:10.1093/nar/14.1.583","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/14.1.583","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/339445","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040912808","display_name":"Christian Marck","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128565","display_name":"CEA Paris-Saclay","ror":"https://ror.org/03n15ch10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Christian Marck","raw_affiliation_strings":["Service de Biochimie, Bat-142, D\u00e9partement de Biologie, Centre d'Etudes Nucl\u00e9aires de Saclay91191 Gif-sur-Yvette, Cedex, France"],"affiliations":[{"raw_affiliation_string":"Service de Biochimie, Bat-142, D\u00e9partement de Biologie, Centre d'Etudes Nucl\u00e9aires de Saclay91191 Gif-sur-Yvette, Cedex, France","institution_ids":["https://openalex.org/I4210128565"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5040912808"],"corresponding_institution_ids":["https://openalex.org/I4210128565"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":1.4398,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.81334785,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":"1","first_page":"583","last_page":"590"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.792513370513916},{"id":"https://openalex.org/keywords/dot-matrix","display_name":"Dot matrix","score":0.7317444682121277},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6771000623703003},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.555996298789978},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.544901430606842},{"id":"https://openalex.org/keywords/pbr322","display_name":"PBR322","score":0.5106645226478577},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5056412220001221},{"id":"https://openalex.org/keywords/restriction-site","display_name":"Restriction site","score":0.4913264811038971},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.48705676198005676},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.42218634486198425},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.41862937808036804},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3798086941242218},{"id":"https://openalex.org/keywords/restriction-enzyme","display_name":"Restriction enzyme","score":0.2486131191253662},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19037097692489624},{"id":"https://openalex.org/keywords/plasmid","display_name":"Plasmid","score":0.18884587287902832},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1883598268032074},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.07438048720359802}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.792513370513916},{"id":"https://openalex.org/C21119673","wikidata":"https://www.wikidata.org/wiki/Q3714476","display_name":"Dot matrix","level":2,"score":0.7317444682121277},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6771000623703003},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.555996298789978},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.544901430606842},{"id":"https://openalex.org/C205225487","wikidata":"https://www.wikidata.org/wiki/Q287604","display_name":"PBR322","level":4,"score":0.5106645226478577},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5056412220001221},{"id":"https://openalex.org/C58301748","wikidata":"https://www.wikidata.org/wiki/Q1074969","display_name":"Restriction site","level":4,"score":0.4913264811038971},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.48705676198005676},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.42218634486198425},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.41862937808036804},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3798086941242218},{"id":"https://openalex.org/C128319531","wikidata":"https://www.wikidata.org/wiki/Q219715","display_name":"Restriction enzyme","level":3,"score":0.2486131191253662},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19037097692489624},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.18884587287902832},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1883598268032074},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.07438048720359802},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004262","descriptor_name":"DNA Restriction Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004262","descriptor_name":"DNA Restriction Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004262","descriptor_name":"DNA Restriction Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/14.1.583","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/14.1.583","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:3003684","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/3003684","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:232684","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC339445","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:339445","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/339445","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:339445","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/339445","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.5199999809265137,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1641093167","https://openalex.org/W1980946997","https://openalex.org/W1981014117","https://openalex.org/W2007618593","https://openalex.org/W2061996139","https://openalex.org/W2074231493","https://openalex.org/W2076735576","https://openalex.org/W2086222342","https://openalex.org/W2135165879"],"related_works":["https://openalex.org/W2072660680","https://openalex.org/W2439218519","https://openalex.org/W1992065723","https://openalex.org/W2002307242","https://openalex.org/W2114059104","https://openalex.org/W2011602722","https://openalex.org/W3151149400","https://openalex.org/W2094959732","https://openalex.org/W2805252915","https://openalex.org/W1968825194"],"abstract_inverted_index":{"A":[0,129],"fast":[1],"restriction":[2,33],"sites":[3],"search":[4,20,50,88],"algorithm":[5],"using":[6,31,119],"a":[7,32,41,52,60,68,90,120,150],"quadruplet":[8],"look-ahead":[9],"feature":[10],"has":[11,76],"been":[12,78],"written":[13,79],"in":[14,80,140,148],"6502":[15],"assembly":[16,81],"language":[17],"code.":[18],"The":[19,49,108],"time,":[21],"tested":[22],"on":[23],"the":[24,87],"sequence":[25,54,93],"of":[26,45,71,89,122,127,132,153,159],"pBR322,":[27],"is":[28,138],"4.1":[29],"s/kilobase":[30],"site":[34,43],"library":[35],"including":[36],"112":[37],"specificities":[38],"corresponding":[39],"to":[40,64],"total":[42],"length":[44],"over":[46],"700":[47],"bases.":[48],"for":[51,86],"short":[53],"(less":[55],"than":[56],"36":[57],"bases)":[58,66],"within":[59],"longer":[61],"one":[62],"(up":[63],"9999":[65],"with":[67,94],"given":[69],"number":[70],"mismatches":[72],"or":[73,97,104],"gaps":[74,99],"allowed":[75,100],"also":[77],"language.":[82],"Typical":[83],"run":[84],"time":[85],"12":[91],"base":[92],"1,":[95],"2":[96],"3":[98,141],"are":[101,146],"6.2,":[102],"9.4":[103],"13.6":[105],"s/kilobase,":[106],"respectively.":[107],"dot":[109],"matrix":[110,131],"analysis":[111,158],"needs":[112],"7.5":[113],"minutes":[114],"per":[115],"square":[116],"kilobase":[117],"when":[118],"stringency":[121],"15":[123],"matched":[124],"bases":[125],"out":[126],"25.":[128],"7/21":[130],"two":[133],"500":[134],"amino":[135],"acid":[136],"proteins":[137],"obtained":[139],"minutes.":[142],"These":[143],"three":[144],"routines":[145],"included":[147],"DPSA,":[149],"general":[151],"package":[152],"programs":[154],"allowing":[155],"manipulation":[156],"and":[157,161],"DNA":[160],"protein":[162],"sequences.":[163]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
