{"id":"https://openalex.org/W2574808400","doi":"https://doi.org/10.1093/database/baw154","title":"blend4php: a PHP API for galaxy","display_name":"blend4php: a PHP API for galaxy","publication_year":2016,"publication_date":"2016-11-16","ids":{"openalex":"https://openalex.org/W2574808400","doi":"https://doi.org/10.1093/database/baw154","mag":"2574808400","pmid":"https://pubmed.ncbi.nlm.nih.gov/28077564"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw154","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw154/19228444/baw154.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw154/19228444/baw154.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077021682","display_name":"Connor Wytko","orcid":null},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Connor Wytko","raw_affiliation_strings":["Department of Horticulture and","School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA 99164, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture and","institution_ids":[]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA 99164, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090684956","display_name":"Brian Pando","orcid":"https://orcid.org/0000-0002-8133-631X"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Soto","raw_affiliation_strings":["Department of Horticulture and","School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA 99164, USA"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture and","institution_ids":[]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA 99164, USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015114586","display_name":"Stephen Ficklin","orcid":"https://orcid.org/0000-0001-9138-6292"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Stephen P. Ficklin","raw_affiliation_strings":["Department of Horticulture and"],"affiliations":[{"raw_affiliation_string":"Department of Horticulture and","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015114586"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.6968,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.9105501,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2017","issue":null,"first_page":"baw154","last_page":"baw154"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12917","display_name":"Astronomy and Astrophysical Research","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/3105","display_name":"Instrumentation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12917","display_name":"Astronomy and Astrophysical Research","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/3105","display_name":"Instrumentation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14163","display_name":"Astronomical Observations and Instrumentation","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9416000247001648,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6358839869499207},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5448127388954163},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3256164789199829}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6358839869499207},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5448127388954163},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3256164789199829}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baw154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw154","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw154/19228444/baw154.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:28077564","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28077564","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5225400","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5225400","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw154","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw154/19228444/baw154.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G3484266289","display_name":null,"funder_award_id":"1443040","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2574808400.pdf","grobid_xml":"https://content.openalex.org/works/W2574808400.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1589895468","https://openalex.org/W2001709424","https://openalex.org/W2004149738","https://openalex.org/W2015968355","https://openalex.org/W2022296304","https://openalex.org/W2035992963","https://openalex.org/W2085824957","https://openalex.org/W2098229525","https://openalex.org/W2144610372","https://openalex.org/W2147901668","https://openalex.org/W2167556622","https://openalex.org/W2224343643","https://openalex.org/W2346143774","https://openalex.org/W2402910431"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Galaxy":[0,77,96],"is":[1,17,126],"a":[2,18,34,59,75],"popular":[3],"framework":[4],"for":[5,12,21,92,102,120],"execution":[6],"of":[7,49,74,95,105,132],"complex":[8],"analytical":[9],"pipelines":[10],"typically":[11],"large":[13],"data":[14],"sets,":[15],"and":[16,28,37,72,84,108,125],"commonly":[19],"used":[20],"(but":[22],"not":[23],"limited":[24],"to)":[25],"genomic,":[26],"genetic":[27,109],"related":[29],"biological":[30],"analysis.":[31],"It":[32],"provides":[33],"web":[35,63,110],"front-end":[36],"integrates":[38],"with":[39,97],"high":[40],"performance":[41],"computing":[42],"resources.":[43],"Here":[44],"we":[45],"report":[46],"the":[47,50,93,99,103,133],"development":[48],"blend4php":[51,67,87],"library":[52,88,119],"that":[53],"wraps":[54],"Galaxy's":[55],"RESTful":[56],"API":[57],"into":[58],"PHP-based":[60,62],"library.":[61],"applications":[64],"can":[65],"use":[66,121],"to":[68],"automate":[69],"execution,":[70],"monitoring":[71],"management":[73],"remote":[76],"server,":[78],"including":[79],"its":[80],"users,":[81],"workflows,":[82],"jobs":[83],"more.":[85],"The":[86],"was":[89,114],"specifically":[90],"developed":[91],"integration":[94],"Tripal,":[98],"open-source":[100],"toolkit":[101],"creation":[104],"online":[106],"genomic":[107],"sites.":[111],"However,":[112],"it":[113],"designed":[115],"as":[116],"an":[117],"independent":[118],"by":[122],"any":[123],"application,":[124],"freely":[127],"available":[128],"under":[129],"version":[130],"3":[131],"GNU":[134],"Lesser":[135],"General":[136],"Public":[137],"License":[138],"(LPGL":[139],"v3.0)":[140],"at":[141],"https://github.com/galaxyproject/blend4phpDatabase":[142],"URL:":[143],"https://github.com/galaxyproject/blend4php.":[144]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
