{"id":"https://openalex.org/W2334693611","doi":"https://doi.org/10.1093/database/baw040","title":"RegenBase: a knowledge base of spinal cord injury biology for translational research","display_name":"RegenBase: a knowledge base of spinal cord injury biology for translational research","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2334693611","doi":"https://doi.org/10.1093/database/baw040","mag":"2334693611","pmid":"https://pubmed.ncbi.nlm.nih.gov/27055827"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw040","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw040/17473468/baw040.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw040/17473468/baw040.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062800749","display_name":"Alison Callahan","orcid":"https://orcid.org/0000-0001-5163-380X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison Callahan","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011850830","display_name":"Saminda Abeyruwan","orcid":null},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saminda W. Abeyruwan","raw_affiliation_strings":["Department of Computer Science, University of Miami, Coral Gables, FL 33146"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Miami, Coral Gables, FL 33146","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059235004","display_name":"Hassan Al\u2010Ali","orcid":"https://orcid.org/0000-0002-8899-3443"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hassan Al-Ali","raw_affiliation_strings":["Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136"],"affiliations":[{"raw_affiliation_string":"Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108402419","display_name":"Kunie Sakurai","orcid":null},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kunie Sakurai","raw_affiliation_strings":["Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136"],"affiliations":[{"raw_affiliation_string":"Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019326045","display_name":"Adam R. Ferguson","orcid":"https://orcid.org/0000-0001-7102-1608"},"institutions":[{"id":"https://openalex.org/I1315708478","display_name":"San Francisco VA Medical Center","ror":"https://ror.org/049peqw80","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315708478","https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210125474","https://openalex.org/I4210143381"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210157890","display_name":"Neurological Surgery","ror":"https://ror.org/04r0gp612","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210157890"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam R. Ferguson","raw_affiliation_strings":["Brain and Spinal Injury Center (BASIC), Department of Neurological Surgery, University of California, San Francisco; San Francisco Veterans Affairs Medical Center, San Francisco, CA 94143","Brain and Spinal Injury Center (BASIC), Department of Neurological Surgery, University of California, San Francisco","San Francisco Veterans Affairs Medical Center, San Francisco, CA 94143"],"affiliations":[{"raw_affiliation_string":"Brain and Spinal Injury Center (BASIC), Department of Neurological Surgery, University of California, San Francisco; San Francisco Veterans Affairs Medical Center, San Francisco, CA 94143","institution_ids":[]},{"raw_affiliation_string":"Brain and Spinal Injury Center (BASIC), Department of Neurological Surgery, University of California, San Francisco","institution_ids":["https://openalex.org/I4210157890","https://openalex.org/I180670191"]},{"raw_affiliation_string":"San Francisco Veterans Affairs Medical Center, San Francisco, CA 94143","institution_ids":["https://openalex.org/I1315708478"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012696999","display_name":"Phillip G. Popovich","orcid":"https://orcid.org/0000-0003-1329-7395"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phillip G. Popovich","raw_affiliation_strings":["Center for Brain and Spinal Cord Repair and the Department of Neuroscience, The Ohio State University, Columbus, OH 43210"],"affiliations":[{"raw_affiliation_string":"Center for Brain and Spinal Cord Repair and the Department of Neuroscience, The Ohio State University, Columbus, OH 43210","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nigam H. Shah","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053042895","display_name":"Ubbo Visser","orcid":"https://orcid.org/0000-0002-1254-2566"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ubbo Visser","raw_affiliation_strings":["Department of Computer Science, University of Miami, Coral Gables, FL 33146"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Miami, Coral Gables, FL 33146","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034404096","display_name":"John L. Bixby","orcid":"https://orcid.org/0000-0003-1633-5318"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John L. Bixby","raw_affiliation_strings":["Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136 Center for Computational Science, University of Miami, Coral Gables, FL 33146 Department of Cellular and Molecular Pharmacology, University of Miami School of Medicine, Miami, FL 33136, USA","Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136","Center for Computational Science, University of Miami, Coral Gables, FL 33146","Department of Cellular and Molecular Pharmacology, University of Miami School of Medicine, Miami, FL 33136, USA"],"affiliations":[{"raw_affiliation_string":"Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136 Center for Computational Science, University of Miami, Coral Gables, FL 33146 Department of Cellular and Molecular Pharmacology, University of Miami School of Medicine, Miami, FL 33136, USA","institution_ids":[]},{"raw_affiliation_string":"Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Center for Computational Science, University of Miami, Coral Gables, FL 33146","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Department of Cellular and Molecular Pharmacology, University of Miami School of Medicine, Miami, FL 33136, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062194249","display_name":"Vance Lemmon","orcid":"https://orcid.org/0000-0003-3550-7576"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vance P. Lemmon","raw_affiliation_strings":["Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136 Center for Computational Science, University of Miami, Coral Gables, FL 33146 vlemmon@miami.edu","Center for Computational Science, University of Miami, Coral Gables, FL 33146","Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136"],"affiliations":[{"raw_affiliation_string":"Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136 Center for Computational Science, University of Miami, Coral Gables, FL 33146 vlemmon@miami.edu","institution_ids":[]},{"raw_affiliation_string":"Center for Computational Science, University of Miami, Coral Gables, FL 33146","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Miami Project to Cure Paralysis, University of Miami School of Medicine, Miami, FL 33136","institution_ids":["https://openalex.org/I145608581"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5062194249"],"corresponding_institution_ids":["https://openalex.org/I145608581"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.2202,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.79986434,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"baw040","last_page":"baw040"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.927299976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.927299976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7272921800613403},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6470171213150024},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.6175549626350403},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6037529706954956},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5418123006820679},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5297373533248901},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4571918547153473},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4526110589504242},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.4484368860721588},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.44628968834877014},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4459574222564697},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.338543176651001},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27455854415893555},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10927867889404297}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7272921800613403},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6470171213150024},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.6175549626350403},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6037529706954956},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5418123006820679},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5297373533248901},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4571918547153473},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4526110589504242},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.4484368860721588},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.44628968834877014},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4459574222564697},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.338543176651001},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27455854415893555},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10927867889404297},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004195","descriptor_name":"Disease Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004195","descriptor_name":"Disease Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004195","descriptor_name":"Disease Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013119","descriptor_name":"Spinal Cord Injuries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013119","descriptor_name":"Spinal Cord Injuries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013119","descriptor_name":"Spinal Cord Injuries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baw040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw040","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw040/17473468/baw040.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27055827","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27055827","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:ark:/13030/qt7rj25054","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt7rj25054","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/7rj25054","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3795026","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4823819","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw040","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw040","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/database/baw040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw040","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw040/17473468/baw040.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306101","display_name":"National Aeronautics and Space Administration","ror":"https://ror.org/027ka1x80"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2334693611.pdf","grobid_xml":"https://content.openalex.org/works/W2334693611.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W91636976","https://openalex.org/W1505770165","https://openalex.org/W1582999643","https://openalex.org/W1596232896","https://openalex.org/W1693122999","https://openalex.org/W1966125392","https://openalex.org/W1966603728","https://openalex.org/W1969605785","https://openalex.org/W1976599295","https://openalex.org/W1982022486","https://openalex.org/W1987570861","https://openalex.org/W1989893435","https://openalex.org/W1990693279","https://openalex.org/W1994524645","https://openalex.org/W2002314797","https://openalex.org/W2003586842","https://openalex.org/W2004538934","https://openalex.org/W2007622742","https://openalex.org/W2011497398","https://openalex.org/W2011925726","https://openalex.org/W2016686901","https://openalex.org/W2016796858","https://openalex.org/W2016976521","https://openalex.org/W2017867335","https://openalex.org/W2019599792","https://openalex.org/W2020541351","https://openalex.org/W2025355640","https://openalex.org/W2035585923","https://openalex.org/W2041200987","https://openalex.org/W2054754827","https://openalex.org/W2054872387","https://openalex.org/W2056613579","https://openalex.org/W2058349530","https://openalex.org/W2059837418","https://openalex.org/W2064140933","https://openalex.org/W2066897354","https://openalex.org/W2067833766","https://openalex.org/W2068350614","https://openalex.org/W2072334074","https://openalex.org/W2075739824","https://openalex.org/W2085512194","https://openalex.org/W2086096185","https://openalex.org/W2086286404","https://openalex.org/W2090419287","https://openalex.org/W2094215712","https://openalex.org/W2094791781","https://openalex.org/W2095263564","https://openalex.org/W2098693458","https://openalex.org/W2103017472","https://openalex.org/W2106457523","https://openalex.org/W2107589629","https://openalex.org/W2114864966","https://openalex.org/W2118976126","https://openalex.org/W2119676748","https://openalex.org/W2120771633","https://openalex.org/W2125004669","https://openalex.org/W2126434293","https://openalex.org/W2128763542","https://openalex.org/W2132306279","https://openalex.org/W2133614244","https://openalex.org/W2134975525","https://openalex.org/W2137378906","https://openalex.org/W2144427809","https://openalex.org/W2145627818","https://openalex.org/W2152265294","https://openalex.org/W2152973812","https://openalex.org/W2153531925","https://openalex.org/W2154829072","https://openalex.org/W2158021569","https://openalex.org/W2170147460","https://openalex.org/W2170459165","https://openalex.org/W2260667602","https://openalex.org/W2282840184","https://openalex.org/W2410922716","https://openalex.org/W2501765443","https://openalex.org/W4247333492","https://openalex.org/W4285719527","https://openalex.org/W6692881816"],"related_works":["https://openalex.org/W2116726748","https://openalex.org/W2098932404","https://openalex.org/W2964648167","https://openalex.org/W2156467546","https://openalex.org/W4306399392","https://openalex.org/W4297818780","https://openalex.org/W2166817550","https://openalex.org/W2748109040","https://openalex.org/W2053901275","https://openalex.org/W2170463736"],"abstract_inverted_index":{"Spinal":[0],"cord":[1],"injury":[2],"(SCI)":[3],"research":[4],"is":[5,183],"a":[6,78,89],"data-rich":[7],"field":[8],"that":[9,30,146],"aims":[10],"to":[11,155,176],"identify":[12],"the":[13,45,107,123,126,172],"biological":[14,157,169],"mechanisms":[15],"resulting":[16],"in":[17,44,122],"loss":[18],"of":[19,49,66,92,109,125,174],"function":[20],"and":[21,39,60,72,100,114,117,136,143,153,159,189],"mobility":[22],"after":[23,33,180],"SCI,":[24,130],"as":[25,27],"well":[26],"develop":[28],"therapies":[29],"promote":[31],"recovery":[32],"injury.":[34],"SCI":[35,93,119],"experimental":[36,101],"methods,":[37],"data":[38,105,144],"domain":[40,120],"knowledge":[41,90,121],"are":[42],"locked":[43],"largely":[46],"unstructured":[47],"text":[48],"scientific":[50],"publications,":[51],"making":[52],"large":[53],"scale":[54],"integration":[55],"with":[56],"existing":[57],"bioinformatics":[58],"resources":[59],"subsequent":[61],"analysis":[62],"infeasible.":[63],"The":[64],"lack":[65],"standard":[67],"reporting":[68],"for":[69,129,186],"experiment":[70,76],"variables":[71],"results":[73],"also":[74,154],"makes":[75],"replicability":[77],"significant":[79],"challenge.":[80],"To":[81],"address":[82],"these":[83],"challenges,":[84],"we":[85,165],"have":[86,166],"developed":[87],"RegenBase,":[88,164],"base":[91],"biology.":[94],"RegenBase":[95,138,151,182],"integrates":[96],"curated":[97],"literature-sourced":[98],"facts":[99],"details,":[102],"raw":[103],"assay":[104],"profiling":[106],"effect":[108],"compounds":[110],"on":[111],"enzyme":[112],"activity":[113],"cell":[115],"growth,":[116],"structured":[118],"form":[124],"first":[127],"ontology":[128],"using":[131],"Semantic":[132],"Web":[133],"representation":[134],"languages":[135],"frameworks.":[137],"uses":[139],"consistent":[140],"identifier":[141],"schemes":[142],"representations":[145],"enable":[147],"automated":[148],"linking":[149,171],"among":[150],"statements":[152],"other":[156],"databases":[158],"electronic":[160],"resources.":[161],"By":[162],"querying":[163,188],"identified":[167],"novel":[168],"hypotheses":[170],"effects":[173],"perturbagens":[175],"observed":[177],"behavioral":[178],"outcomes":[179],"SCI.":[181],"publicly":[184],"available":[185],"browsing,":[187],"download.Database":[190],"URL:http://regenbase.org.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
