{"id":"https://openalex.org/W2996937995","doi":"https://doi.org/10.1093/bioinformatics/btz949","title":"Causal network perturbations for instance-specific analysis of single cell and disease samples","display_name":"Causal network perturbations for instance-specific analysis of single cell and disease samples","publication_year":2019,"publication_date":"2019-12-19","ids":{"openalex":"https://openalex.org/W2996937995","doi":"https://doi.org/10.1093/bioinformatics/btz949","mag":"2996937995","pmid":"https://pubmed.ncbi.nlm.nih.gov/31873725"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz949","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz949","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/8/2515/33116795/btz949.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/8/2515/33116795/btz949.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071831267","display_name":"Kristina L. Buschur","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristina L Buschur","raw_affiliation_strings":["Department of Computational and Systems Biology, University of Pittsburgh School of Medicine , Pittsburgh, PA 15260, USA","Joint CMU-Pitt PhD Program in Computational Biology , Pittsburgh, PA 15260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational and Systems Biology, University of Pittsburgh School of Medicine , Pittsburgh, PA 15260, USA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Joint CMU-Pitt PhD Program in Computational Biology , Pittsburgh, PA 15260, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034705320","display_name":"Maria Chikina","orcid":"https://orcid.org/0000-0003-2550-5403"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria Chikina","raw_affiliation_strings":["Department of Computational and Systems Biology, University of Pittsburgh School of Medicine , Pittsburgh, PA 15260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational and Systems Biology, University of Pittsburgh School of Medicine , Pittsburgh, PA 15260, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042618575","display_name":"Panayiotis V. Benos","orcid":"https://orcid.org/0000-0003-3172-3132"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Panayiotis V Benos","raw_affiliation_strings":["Department of Computational and Systems Biology, University of Pittsburgh School of Medicine , Pittsburgh, PA 15260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational and Systems Biology, University of Pittsburgh School of Medicine , Pittsburgh, PA 15260, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042618575"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8524,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.73359062,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"36","issue":"8","first_page":"2515","last_page":"2521"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6158238649368286},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4508384168148041},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44615745544433594},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3363913297653198},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33339959383010864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3219030499458313},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24872323870658875},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14094460010528564},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10768145322799683}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6158238649368286},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4508384168148041},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44615745544433594},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3363913297653198},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33339959383010864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3219030499458313},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24872323870658875},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14094460010528564},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10768145322799683}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz949","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz949","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/8/2515/33116795/btz949.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31873725","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31873725","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7178399","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7178399","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz949","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz949","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/8/2515/33116795/btz949.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2975004386","display_name":null,"funder_award_id":"R01LM012087","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5991972933","display_name":null,"funder_award_id":"U01HL137159","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2996937995.pdf","grobid_xml":"https://content.openalex.org/works/W2996937995.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W47333261","https://openalex.org/W1512489780","https://openalex.org/W1854769545","https://openalex.org/W1884291487","https://openalex.org/W1964079962","https://openalex.org/W1965842819","https://openalex.org/W1977822330","https://openalex.org/W1978012795","https://openalex.org/W1984689597","https://openalex.org/W1998137759","https://openalex.org/W2008495749","https://openalex.org/W2011417152","https://openalex.org/W2053631236","https://openalex.org/W2064955782","https://openalex.org/W2068934160","https://openalex.org/W2072177644","https://openalex.org/W2073015226","https://openalex.org/W2073307618","https://openalex.org/W2075627753","https://openalex.org/W2096283457","https://openalex.org/W2097360283","https://openalex.org/W2114104545","https://openalex.org/W2123879591","https://openalex.org/W2125631472","https://openalex.org/W2130410032","https://openalex.org/W2146512944","https://openalex.org/W2158384363","https://openalex.org/W2159482845","https://openalex.org/W2159707944","https://openalex.org/W2161098391","https://openalex.org/W2187089797","https://openalex.org/W2234357922","https://openalex.org/W2270020113","https://openalex.org/W2275877493","https://openalex.org/W2417388301","https://openalex.org/W2531327699","https://openalex.org/W2551668581","https://openalex.org/W2556538645","https://openalex.org/W2557366952","https://openalex.org/W2557632452","https://openalex.org/W2558182048","https://openalex.org/W2559931140","https://openalex.org/W2582415638","https://openalex.org/W2605810679","https://openalex.org/W2619474479","https://openalex.org/W2727913218","https://openalex.org/W2771365419","https://openalex.org/W2776999167","https://openalex.org/W2791842758","https://openalex.org/W2794480084","https://openalex.org/W2801401400","https://openalex.org/W2806548928","https://openalex.org/W2809667147","https://openalex.org/W2887103892","https://openalex.org/W2890292344","https://openalex.org/W2914129560","https://openalex.org/W2949444664","https://openalex.org/W2950545834","https://openalex.org/W2951118605","https://openalex.org/W2969698477","https://openalex.org/W4294216483","https://openalex.org/W4294541781","https://openalex.org/W6601961807","https://openalex.org/W6667724227","https://openalex.org/W6754372349"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2053286651","https://openalex.org/W2181743346","https://openalex.org/W2187401768","https://openalex.org/W2181413294","https://openalex.org/W2989452537","https://openalex.org/W2052122378","https://openalex.org/W2544423928","https://openalex.org/W2062023542"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
