{"id":"https://openalex.org/W2993207812","doi":"https://doi.org/10.1093/bioinformatics/btz907","title":"schex avoids overplotting for large single-cell RNA-sequencing datasets","display_name":"schex avoids overplotting for large single-cell RNA-sequencing datasets","publication_year":2019,"publication_date":"2019-11-29","ids":{"openalex":"https://openalex.org/W2993207812","doi":"https://doi.org/10.1093/bioinformatics/btz907","mag":"2993207812","pmid":"https://pubmed.ncbi.nlm.nih.gov/31794001"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz907","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2291/33027528/btz907.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2291/33027528/btz907.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090864358","display_name":"Saskia Freytag","orcid":"https://orcid.org/0000-0002-2185-7068"},"institutions":[{"id":"https://openalex.org/I2799971621","display_name":"Harry Perkins Institute of Medical Research","ror":"https://ror.org/02xz7d723","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799971621"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Saskia Freytag","raw_affiliation_strings":["Molecular Medicine, Harry Perkins Institute of Medical Research , Perth, 6009, WA, Australia"],"affiliations":[{"raw_affiliation_string":"Molecular Medicine, Harry Perkins Institute of Medical Research , Perth, 6009, WA, Australia","institution_ids":["https://openalex.org/I2799971621"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057408603","display_name":"Ryan Lister","orcid":"https://orcid.org/0000-0001-6637-7239"},"institutions":[{"id":"https://openalex.org/I1337719021","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86","country_code":"AU","type":"government","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349"]},{"id":"https://openalex.org/I2799971621","display_name":"Harry Perkins Institute of Medical Research","ror":"https://ror.org/02xz7d723","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I2799971621"]},{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Ryan Lister","raw_affiliation_strings":["Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia , Perth, 6009, WA, Australia\u00a0","Molecular Medicine, Harry Perkins Institute of Medical Research , Perth, 6009, WA, Australia"],"affiliations":[{"raw_affiliation_string":"Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia , Perth, 6009, WA, Australia\u00a0","institution_ids":["https://openalex.org/I177877127","https://openalex.org/I1337719021"]},{"raw_affiliation_string":"Molecular Medicine, Harry Perkins Institute of Medical Research , Perth, 6009, WA, Australia","institution_ids":["https://openalex.org/I2799971621"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5057408603","https://openalex.org/A5090864358"],"corresponding_institution_ids":["https://openalex.org/I1337719021","https://openalex.org/I177877127","https://openalex.org/I2799971621"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6012,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.67910561,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"7","first_page":"2291","last_page":"2292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9496999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.906499981880188,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9846062660217285},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.768498957157135},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5188995003700256},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49247679114341736},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45768558979034424},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.45720937848091125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35996705293655396},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15759176015853882},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.09836170077323914},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08856591582298279},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07777649164199829},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0772370994091034}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9846062660217285},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.768498957157135},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5188995003700256},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49247679114341736},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45768558979034424},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.45720937848091125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35996705293655396},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15759176015853882},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.09836170077323914},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08856591582298279},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07777649164199829},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0772370994091034}],"mesh":[{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz907","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2291/33027528/btz907.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31794001","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31794001","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/8d68fecc-fb3e-4235-a1fd-ec916946cf44","is_oa":false,"landing_page_url":"https://research-repository.uwa.edu.au/en/publications/8d68fecc-fb3e-4235-a1fd-ec916946cf44","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Freytag , S &amp; Lister , R 2020 , ' Schex avoids overplotting for large single cell RNA-sequencing datasets ' , Bioinformatics (Oxford, England) , vol. 36 , no. 7 , pp. 2291-2292 . https://doi.org/10.1093/bioinformatics/btz907","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz907","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2291/33027528/btz907.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2993207812.pdf","grobid_xml":"https://content.openalex.org/works/W2993207812.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2037432955","https://openalex.org/W2076914356","https://openalex.org/W2176484213","https://openalex.org/W2746479894","https://openalex.org/W2753908609","https://openalex.org/W2794480084","https://openalex.org/W2912390237","https://openalex.org/W2949829455","https://openalex.org/W6685794565"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2133055377","https://openalex.org/W2287365612"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
