{"id":"https://openalex.org/W2994531384","doi":"https://doi.org/10.1093/bioinformatics/btz906","title":"DNA Readout Viewer (DRV): visualization of specificity determining patterns of protein-binding DNA segments","display_name":"DNA Readout Viewer (DRV): visualization of specificity determining patterns of protein-binding DNA segments","publication_year":2019,"publication_date":"2019-11-29","ids":{"openalex":"https://openalex.org/W2994531384","doi":"https://doi.org/10.1093/bioinformatics/btz906","mag":"2994531384","pmid":"https://pubmed.ncbi.nlm.nih.gov/31793988"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz906","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz906","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2286/33027449/btz906.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2286/33027449/btz906.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004616047","display_name":"Kriszti\u00e1n \u00c1d\u00e1m","orcid":"https://orcid.org/0000-0002-4002-9698"},"institutions":[{"id":"https://openalex.org/I4210122500","display_name":"Institute of Biophysics","ror":"https://ror.org/038synb39","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210122500","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Krisztian Adam","raw_affiliation_strings":["Institute of Biophysics, Biological Research Centre , H-6726 Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, Biological Research Centre , H-6726 Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210122500"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040153160","display_name":"Zolt\u00e1n Gy\u00f6rgyp\u00e1l","orcid":"https://orcid.org/0000-0002-6872-4545"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210122500","display_name":"Institute of Biophysics","ror":"https://ror.org/038synb39","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210122500","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Zoltan Gyorgypal","raw_affiliation_strings":["Institute of Biophysics, Biological Research Centre , H-6726 Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, Biological Research Centre , H-6726 Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210122500"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018812218","display_name":"Zolt\u00e1n Heged\u00fcs","orcid":"https://orcid.org/0000-0001-9459-1654"},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210122500","display_name":"Institute of Biophysics","ror":"https://ror.org/038synb39","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I4210122500","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I79741316","display_name":"University of Pecs","ror":"https://ror.org/037b5pv06","country_code":"HU","type":"education","lineage":["https://openalex.org/I79741316"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"Zoltan Hegedus","raw_affiliation_strings":["Department of Biochemistry and Medical Chemistry, Medical School, University of P\u00e9cs , H-7622 P\u00e9cs, Hungary\u00a0","Institute of Biophysics, Biological Research Centre , H-6726 Szeged, Hungary"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Medical Chemistry, Medical School, University of P\u00e9cs , H-7622 P\u00e9cs, Hungary\u00a0","institution_ids":["https://openalex.org/I79741316"]},{"raw_affiliation_string":"Institute of Biophysics, Biological Research Centre , H-6726 Szeged, Hungary","institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210122500"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018812218"],"corresponding_institution_ids":["https://openalex.org/I2800351701","https://openalex.org/I4210122500","https://openalex.org/I79741316"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3409,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.59960537,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"7","first_page":"2286","last_page":"2287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.7483075857162476},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6411779522895813},{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.6172064542770386},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6139214634895325},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.5314064621925354},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.47940370440483093},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4353256821632385},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4316403269767761},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37496036291122437},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.32867610454559326},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30812662839889526},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20535939931869507},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19326302409172058}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.7483075857162476},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6411779522895813},{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.6172064542770386},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6139214634895325},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.5314064621925354},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.47940370440483093},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4353256821632385},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4316403269767761},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37496036291122437},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.32867610454559326},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30812662839889526},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20535939931869507},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19326302409172058},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz906","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz906","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2286/33027449/btz906.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31793988","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31793988","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:real.mtak.hu:117274","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400081","display_name":"Repository of the Academy's Library (Library of the Hungarian Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210140733","host_organization_name":"Library and Information Centre of the Hungarian Academy of Sciences","host_organization_lineage":["https://openalex.org/I4210140733"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7141859","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7141859","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz906","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz906","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2286/33027449/btz906.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2994531384.pdf","grobid_xml":"https://content.openalex.org/works/W2994531384.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1994122295","https://openalex.org/W2046943018","https://openalex.org/W2051628563","https://openalex.org/W2101536723","https://openalex.org/W2126217507","https://openalex.org/W2142068542","https://openalex.org/W2147135057","https://openalex.org/W2155844132","https://openalex.org/W2158266834","https://openalex.org/W2268267797","https://openalex.org/W2769058621","https://openalex.org/W2770178180","https://openalex.org/W2806399642","https://openalex.org/W2898364362","https://openalex.org/W2980355954"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W2159038264","https://openalex.org/W2840367830","https://openalex.org/W2168160406","https://openalex.org/W4379233589","https://openalex.org/W1974344026","https://openalex.org/W3124914020","https://openalex.org/W2335033221","https://openalex.org/W2027177155","https://openalex.org/W2024398706"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
