{"id":"https://openalex.org/W2990689232","doi":"https://doi.org/10.1093/bioinformatics/btz870","title":"Protein docking model evaluation by 3D deep convolutional neural networks","display_name":"Protein docking model evaluation by 3D deep convolutional neural networks","publication_year":2019,"publication_date":"2019-11-19","ids":{"openalex":"https://openalex.org/W2990689232","doi":"https://doi.org/10.1093/bioinformatics/btz870","mag":"2990689232","pmid":"https://pubmed.ncbi.nlm.nih.gov/31746961"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz870","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz870","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2113/33027473/btz870.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2113/33027473/btz870.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100411532","display_name":"Xiao Wang","orcid":"https://orcid.org/0000-0003-4435-7098"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao Wang","raw_affiliation_strings":["Department of Computer Science, Purdue University , West Lafayette, IN 47907, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University , West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067994741","display_name":"Genki Terashi","orcid":"https://orcid.org/0000-0002-5339-909X"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Genki Terashi","raw_affiliation_strings":["Department of Biological Sciences, Purdue University , West Lafayette, IN 47907, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Purdue University , West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078844851","display_name":"Charles Christoffer","orcid":"https://orcid.org/0000-0002-6163-6323"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles W Christoffer","raw_affiliation_strings":["Department of Computer Science, Purdue University , West Lafayette, IN 47907, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University , West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007312041","display_name":"Mengmeng Zhu","orcid":"https://orcid.org/0000-0002-8465-0339"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengmeng Zhu","raw_affiliation_strings":["Department of Biological Sciences, Purdue University , West Lafayette, IN 47907, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Purdue University , West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062293219","display_name":"Daisuke Kihara","orcid":"https://orcid.org/0000-0003-4091-6614"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daisuke Kihara","raw_affiliation_strings":["Department of Biological Sciences, Purdue University , West Lafayette, IN 47907, USA","Department of Computer Science, Purdue University , West Lafayette, IN 47907, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Purdue University , West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Computer Science, Purdue University , West Lafayette, IN 47907, USA","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062293219"],"corresponding_institution_ids":["https://openalex.org/I219193219"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.6377,"has_fulltext":false,"cited_by_count":120,"citation_normalized_percentile":{"value":0.95888438,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"7","first_page":"2113","last_page":"2118"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7294864654541016},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7155718803405762},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6675183773040771},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5991418361663818},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5258746147155762},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5245504379272461},{"id":"https://openalex.org/keywords/dove","display_name":"Dove","score":0.5168340802192688},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5104085803031921},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.5000581741333008},{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.45882487297058105},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.421889066696167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3207928538322449},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.31266793608665466},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12821120023727417}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7294864654541016},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7155718803405762},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6675183773040771},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5991418361663818},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5258746147155762},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5245504379272461},{"id":"https://openalex.org/C109703566","wikidata":"https://www.wikidata.org/wiki/Q962709","display_name":"Dove","level":2,"score":0.5168340802192688},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5104085803031921},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.5000581741333008},{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.45882487297058105},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.421889066696167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3207928538322449},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.31266793608665466},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12821120023727417},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz870","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz870","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2113/33027473/btz870.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31746961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31746961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7141855","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7141855","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz870","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz870","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/7/2113/33027473/btz870.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1120349264","display_name":null,"funder_award_id":"T32GM132024","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2919728590","display_name":null,"funder_award_id":"CMMI1825941","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4202522359","display_name":null,"funder_award_id":"R01GM123055","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6575698428","display_name":null,"funder_award_id":"DMS1614777","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7241072156","display_name":null,"funder_award_id":"MCB1925643","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2990689232.pdf","grobid_xml":"https://content.openalex.org/works/W2990689232.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1724277458","https://openalex.org/W1745423006","https://openalex.org/W1914775576","https://openalex.org/W1938743025","https://openalex.org/W1977023245","https://openalex.org/W1981844148","https://openalex.org/W2000383223","https://openalex.org/W2005303195","https://openalex.org/W2021374144","https://openalex.org/W2045550557","https://openalex.org/W2054394841","https://openalex.org/W2055905702","https://openalex.org/W2091710329","https://openalex.org/W2095705004","https://openalex.org/W2098110345","https://openalex.org/W2100025509","https://openalex.org/W2101980405","https://openalex.org/W2111387452","https://openalex.org/W2115879729","https://openalex.org/W2119333768","https://openalex.org/W2124981562","https://openalex.org/W2129454543","https://openalex.org/W2130479394","https://openalex.org/W2140574901","https://openalex.org/W2145793759","https://openalex.org/W2148645951","https://openalex.org/W2161151688","https://openalex.org/W2162258290","https://openalex.org/W2163605009","https://openalex.org/W2170693976","https://openalex.org/W2171173309","https://openalex.org/W2271840356","https://openalex.org/W2318839524","https://openalex.org/W2465190302","https://openalex.org/W2470377678","https://openalex.org/W2583907533","https://openalex.org/W2594725344","https://openalex.org/W2606353404","https://openalex.org/W2625768267","https://openalex.org/W2746313716","https://openalex.org/W2767509030","https://openalex.org/W2783728269","https://openalex.org/W2784883284","https://openalex.org/W2794789522","https://openalex.org/W2915344963","https://openalex.org/W2919115771","https://openalex.org/W2951690294","https://openalex.org/W2952059807","https://openalex.org/W2966489898","https://openalex.org/W3104705366","https://openalex.org/W6674330103","https://openalex.org/W6684191040","https://openalex.org/W6694517276"],"related_works":["https://openalex.org/W2187341605","https://openalex.org/W3004912075","https://openalex.org/W2173669824","https://openalex.org/W2107127921","https://openalex.org/W2913065212","https://openalex.org/W2944571611","https://openalex.org/W3045029306","https://openalex.org/W2471429531","https://openalex.org/W4247206618","https://openalex.org/W3133540795"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":9}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
