{"id":"https://openalex.org/W2990636390","doi":"https://doi.org/10.1093/bioinformatics/btz843","title":"An integrative approach for fine-mapping chromatin interactions","display_name":"An integrative approach for fine-mapping chromatin interactions","publication_year":2019,"publication_date":"2019-11-18","ids":{"openalex":"https://openalex.org/W2990636390","doi":"https://doi.org/10.1093/bioinformatics/btz843","mag":"2990636390","pmid":"https://pubmed.ncbi.nlm.nih.gov/31742318"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1704/33648295/btz843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1704/33648295/btz843.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039804327","display_name":"Artur Jaroszewicz","orcid":"https://orcid.org/0000-0002-1255-3097"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Artur Jaroszewicz","raw_affiliation_strings":["Bioinformatics Interdepartmental Program, University of California , Los Angeles, Los Angeles, CA 90095, USA","Department of Biological Chemistry, University of California , Los Angeles, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Interdepartmental Program, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biological Chemistry, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009275502","display_name":"Jason Ernst","orcid":"https://orcid.org/0000-0003-4026-7853"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210150380","display_name":"Broad Center","ror":"https://ror.org/04tbrah05","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210150380"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jason Ernst","raw_affiliation_strings":["Bioinformatics Interdepartmental Program, University of California , Los Angeles, Los Angeles, CA 90095, USA","Computer Science Department, University of California , Los Angeles, Los Angeles, CA 90095, USA","Department of Biological Chemistry, University of California , Los Angeles, Los Angeles, CA 90095, USA","Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California , Los Angeles, Los Angeles, CA 90095, USA","Jonsson Comprehensive Cancer Center, University of California , Los Angeles, Los Angeles, CA 90095, USA","Molecular Biology Institute, University of California , Los Angeles, Los Angeles, CA 90095, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Interdepartmental Program, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Computer Science Department, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biological Chemistry, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I4210150380","https://openalex.org/I161318765"]},{"raw_affiliation_string":"Jonsson Comprehensive Cancer Center, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Molecular Biology Institute, University of California , Los Angeles, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5009275502"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I4210150380"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5153,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.65617776,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"36","issue":"6","first_page":"1704","last_page":"1711"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ctcf","display_name":"CTCF","score":0.8060781955718994},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7361589074134827},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7343834042549133},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6298795342445374},{"id":"https://openalex.org/keywords/chia-pet","display_name":"ChIA-PET","score":0.5543547868728638},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5225396156311035},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4729202389717102},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.45026659965515137},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4131857752799988},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.33966225385665894},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30662232637405396},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2718144357204437},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2715951204299927},{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.2523570656776428},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23577794432640076}],"concepts":[{"id":"https://openalex.org/C2778760011","wikidata":"https://www.wikidata.org/wiki/Q21163346","display_name":"CTCF","level":5,"score":0.8060781955718994},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7361589074134827},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7343834042549133},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6298795342445374},{"id":"https://openalex.org/C67258246","wikidata":"https://www.wikidata.org/wiki/Q5065897","display_name":"ChIA-PET","level":5,"score":0.5543547868728638},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5225396156311035},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4729202389717102},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.45026659965515137},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4131857752799988},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.33966225385665894},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30662232637405396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2718144357204437},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2715951204299927},{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.2523570656776428},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23577794432640076},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btz843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1704/33648295/btz843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31742318","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31742318","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt2gm0k5fb","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/2gm0k5fb","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 36, iss 6","raw_type":"article"},{"id":"pmh:oai:europepmc.org:6772914","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7425030","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7425030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7425030","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1704/33648295/btz843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"},{"score":0.4099999964237213,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G2333658524","display_name":null,"funder_award_id":"T32HG002536","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2653854159","display_name":null,"funder_award_id":"1254200","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3630818942","display_name":null,"funder_award_id":"DP1DA044371","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7159390087","display_name":null,"funder_award_id":"T32HG002536","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G742467356","display_name":null,"funder_award_id":"U01HG007912","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7634790904","display_name":null,"funder_award_id":"R01ES024995","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2990636390.pdf","grobid_xml":"https://content.openalex.org/works/W2990636390.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1605145036","https://openalex.org/W1831401007","https://openalex.org/W1859117663","https://openalex.org/W1973062929","https://openalex.org/W2018363492","https://openalex.org/W2019251848","https://openalex.org/W2038473742","https://openalex.org/W2076154138","https://openalex.org/W2090037139","https://openalex.org/W2095705004","https://openalex.org/W2097998348","https://openalex.org/W2105242349","https://openalex.org/W2112484474","https://openalex.org/W2131186458","https://openalex.org/W2135993011","https://openalex.org/W2142270559","https://openalex.org/W2149118429","https://openalex.org/W2154598603","https://openalex.org/W2156647225","https://openalex.org/W2164354446","https://openalex.org/W2171111703","https://openalex.org/W2171590421","https://openalex.org/W2259938310","https://openalex.org/W2333286569","https://openalex.org/W2523285811","https://openalex.org/W2534005127","https://openalex.org/W2752211734","https://openalex.org/W2761275051","https://openalex.org/W2803256172","https://openalex.org/W2805837749","https://openalex.org/W2883537281","https://openalex.org/W2896411685","https://openalex.org/W2949423586","https://openalex.org/W2949514938","https://openalex.org/W2992166152","https://openalex.org/W3001791723","https://openalex.org/W6674330103","https://openalex.org/W6674385629","https://openalex.org/W6682128397","https://openalex.org/W6751323511","https://openalex.org/W6753316476"],"related_works":["https://openalex.org/W2582488421","https://openalex.org/W4220758050","https://openalex.org/W2008077261","https://openalex.org/W3191994734","https://openalex.org/W2037920273","https://openalex.org/W4214521951","https://openalex.org/W4241694212","https://openalex.org/W2125397535","https://openalex.org/W4234876096","https://openalex.org/W4394834518"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
