{"id":"https://openalex.org/W2988823899","doi":"https://doi.org/10.1093/bioinformatics/btz823","title":"Improved <i>dropClust</i> R package with integrative analysis support for scRNA-seq data","display_name":"Improved <i>dropClust</i> R package with integrative analysis support for scRNA-seq data","publication_year":2019,"publication_date":"2019-11-02","ids":{"openalex":"https://openalex.org/W2988823899","doi":"https://doi.org/10.1093/bioinformatics/btz823","mag":"2988823899","pmid":"https://pubmed.ncbi.nlm.nih.gov/31693086"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz823","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz823","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109373535","display_name":"Debajyoti Sinha","orcid":null},"institutions":[{"id":"https://openalex.org/I106542073","display_name":"University of Calcutta","ror":"https://ror.org/01e7v7w47","country_code":"IN","type":"education","lineage":["https://openalex.org/I106542073"]},{"id":"https://openalex.org/I6498739","display_name":"Indian Statistical Institute","ror":"https://ror.org/00q2w1j53","country_code":"IN","type":"education","lineage":["https://openalex.org/I6498739"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Debajyoti Sinha","raw_affiliation_strings":["Department of Computer Science & Engineering, University of Calcutta , Kolkata 700098, India","SyMeC Data Center, Indian Statistical Institute , Kolkata 700108, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, University of Calcutta , Kolkata 700098, India","institution_ids":["https://openalex.org/I106542073"]},{"raw_affiliation_string":"SyMeC Data Center, Indian Statistical Institute , Kolkata 700108, India","institution_ids":["https://openalex.org/I6498739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057056215","display_name":"Pradyumn Sinha","orcid":null},"institutions":[{"id":"https://openalex.org/I863896202","display_name":"Delhi Technological University","ror":"https://ror.org/01ztcvt22","country_code":"IN","type":"education","lineage":["https://openalex.org/I863896202"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Pradyumn Sinha","raw_affiliation_strings":["Department of Computer Science & Engineering, Delhi Technological University , New Delhi 110042, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, Delhi Technological University , New Delhi 110042, India","institution_ids":["https://openalex.org/I863896202"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064656385","display_name":"Ritwik Saha","orcid":null},"institutions":[{"id":"https://openalex.org/I863896202","display_name":"Delhi Technological University","ror":"https://ror.org/01ztcvt22","country_code":"IN","type":"education","lineage":["https://openalex.org/I863896202"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ritwik Saha","raw_affiliation_strings":["Department of Computer Science & Engineering, Delhi Technological University , New Delhi 110042, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, Delhi Technological University , New Delhi 110042, India","institution_ids":["https://openalex.org/I863896202"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036061149","display_name":"Sanghamitra Bandyopadhyay","orcid":"https://orcid.org/0000-0001-6370-2083"},"institutions":[{"id":"https://openalex.org/I6498739","display_name":"Indian Statistical Institute","ror":"https://ror.org/00q2w1j53","country_code":"IN","type":"education","lineage":["https://openalex.org/I6498739"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sanghamitra Bandyopadhyay","raw_affiliation_strings":["SyMeC Data Center, Indian Statistical Institute , Kolkata 700108, India"],"affiliations":[{"raw_affiliation_string":"SyMeC Data Center, Indian Statistical Institute , Kolkata 700108, India","institution_ids":["https://openalex.org/I6498739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061015791","display_name":"Debarka Sengupta","orcid":"https://orcid.org/0000-0002-6353-5411"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Debarka Sengupta","raw_affiliation_strings":["Center for Artificial Intelligence, Indraprastha Institute of Information Technology , New Delhi 110020, India","Department of Computational Biology, Center for Artificial Intelligence, Indraprastha Institute of Information Technology , New Delhi 110020, India","Department of Computer Science & Engineering, Indraprastha Institute of Information Technology , New Delhi 110020, India"],"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence, Indraprastha Institute of Information Technology , New Delhi 110020, India","institution_ids":["https://openalex.org/I119939252"]},{"raw_affiliation_string":"Department of Computational Biology, Center for Artificial Intelligence, Indraprastha Institute of Information Technology , New Delhi 110020, India","institution_ids":["https://openalex.org/I119939252"]},{"raw_affiliation_string":"Department of Computer Science & Engineering, Indraprastha Institute of Information Technology , New Delhi 110020, India","institution_ids":["https://openalex.org/I119939252"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5036061149","https://openalex.org/A5061015791"],"corresponding_institution_ids":["https://openalex.org/I119939252","https://openalex.org/I6498739"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5966,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.67293025,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"6","first_page":"1946","last_page":"1947"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9605000019073486,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9567000269889832,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7990255355834961},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6337795257568359},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6207823753356934},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6181572675704956},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.575606644153595},{"id":"https://openalex.org/keywords/locality","display_name":"Locality","score":0.47318196296691895},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.46946799755096436},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.42323964834213257},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33553773164749146},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20683929324150085},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1456688642501831},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10389703512191772}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7990255355834961},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6337795257568359},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6207823753356934},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6181572675704956},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.575606644153595},{"id":"https://openalex.org/C2779808786","wikidata":"https://www.wikidata.org/wiki/Q6664603","display_name":"Locality","level":2,"score":0.47318196296691895},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.46946799755096436},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.42323964834213257},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33553773164749146},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20683929324150085},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1456688642501831},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10389703512191772},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btz823","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz823","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31693086","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31693086","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G416709336","display_name":null,"funder_award_id":"SB/S1/JCB-033/2016","funder_id":"https://openalex.org/F4320320020","funder_display_name":"Inspire Foundation"},{"id":"https://openalex.org/G5197773155","display_name":null,"funder_award_id":"DST/INSPIRE/04/2015/003068","funder_id":"https://openalex.org/F4320320020","funder_display_name":"Inspire Foundation"}],"funders":[{"id":"https://openalex.org/F4320320020","display_name":"Inspire Foundation","ror":"https://ror.org/019s18q02"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2131681506","https://openalex.org/W2572662684","https://openalex.org/W2794521141","https://openalex.org/W2800392236","https://openalex.org/W2900387735","https://openalex.org/W2949177718","https://openalex.org/W2950548777","https://openalex.org/W2951506174","https://openalex.org/W3099768174"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W2123131699","https://openalex.org/W650116260","https://openalex.org/W2378329187","https://openalex.org/W4390790060","https://openalex.org/W2134191509","https://openalex.org/W3209454962","https://openalex.org/W79697243","https://openalex.org/W2314257840","https://openalex.org/W2365800294"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2019-11-22T00:00:00"}
