{"id":"https://openalex.org/W2985066411","doi":"https://doi.org/10.1093/bioinformatics/btz808","title":"HiCBricks: building blocks for efficient handling of large Hi-C datasets","display_name":"HiCBricks: building blocks for efficient handling of large Hi-C datasets","publication_year":2019,"publication_date":"2019-11-05","ids":{"openalex":"https://openalex.org/W2985066411","doi":"https://doi.org/10.1093/bioinformatics/btz808","mag":"2985066411","pmid":"https://pubmed.ncbi.nlm.nih.gov/31697323"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz808","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz808","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1917/32915513/btz808.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1917/32915513/btz808.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030938043","display_name":"Koustav Pal","orcid":"https://orcid.org/0000-0002-6891-1148"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"FIRC Institute of Molecular Oncology","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Koustav Pal","raw_affiliation_strings":["IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy"],"affiliations":[{"raw_affiliation_string":"IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy","institution_ids":["https://openalex.org/I4210114103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035923960","display_name":"Ilario Tagliaferri","orcid":"https://orcid.org/0009-0004-1239-581X"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"FIRC Institute of Molecular Oncology","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ilario Tagliaferri","raw_affiliation_strings":["IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy"],"affiliations":[{"raw_affiliation_string":"IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy","institution_ids":["https://openalex.org/I4210114103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060173750","display_name":"Carmen Maria Livi","orcid":"https://orcid.org/0000-0002-4974-1403"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"FIRC Institute of Molecular Oncology","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carmen Maria Livi","raw_affiliation_strings":["IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy"],"affiliations":[{"raw_affiliation_string":"IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy","institution_ids":["https://openalex.org/I4210114103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046167293","display_name":"Francesco Ferrari","orcid":"https://orcid.org/0000-0002-9811-3753"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210114103","display_name":"FIRC Institute of Molecular Oncology","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesco Ferrari","raw_affiliation_strings":["IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy","Institute of Molecular Genetics, National Research Council , Pavia, Italy"],"affiliations":[{"raw_affiliation_string":"IFOM, The FIRC Institute of Molecular Oncology , Milan, Italy","institution_ids":["https://openalex.org/I4210114103"]},{"raw_affiliation_string":"Institute of Molecular Genetics, National Research Council , Pavia, Italy","institution_ids":["https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046167293"],"corresponding_institution_ids":["https://openalex.org/I4210114103","https://openalex.org/I4210155236"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3409,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.59676867,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"36","issue":"6","first_page":"1917","last_page":"1919"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9510315656661987},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7460558414459229},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6322313547134399},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5992577075958252},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5901641845703125},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5371646881103516},{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.4781954288482666},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.43984299898147583},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3337777853012085},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.17122489213943481},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12132531404495239},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09177395701408386},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07201331853866577},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06958410143852234}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9510315656661987},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7460558414459229},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6322313547134399},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5992577075958252},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5901641845703125},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5371646881103516},{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.4781954288482666},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.43984299898147583},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3337777853012085},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.17122489213943481},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12132531404495239},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09177395701408386},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07201331853866577},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06958410143852234},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz808","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz808","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1917/32915513/btz808.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31697323","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31697323","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7703765","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7703765","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz808","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz808","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/6/1917/32915513/btz808.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2985066411.pdf","grobid_xml":"https://content.openalex.org/works/W2985066411.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1973062929","https://openalex.org/W2070021921","https://openalex.org/W2090037139","https://openalex.org/W2131004167","https://openalex.org/W2160697532","https://openalex.org/W2407798683","https://openalex.org/W2481029670","https://openalex.org/W2625231465","https://openalex.org/W2738924259","https://openalex.org/W2755403661","https://openalex.org/W2765567136","https://openalex.org/W2807993805","https://openalex.org/W2892186093","https://openalex.org/W2906147404","https://openalex.org/W4232061444"],"related_works":["https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W3156537409","https://openalex.org/W2140163842","https://openalex.org/W2747931568","https://openalex.org/W2098651180","https://openalex.org/W2921090651","https://openalex.org/W2133055377","https://openalex.org/W2287365612"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
