{"id":"https://openalex.org/W2980497717","doi":"https://doi.org/10.1093/bioinformatics/btz790","title":"CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples","display_name":"CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples","publication_year":2019,"publication_date":"2019-10-16","ids":{"openalex":"https://openalex.org/W2980497717","doi":"https://doi.org/10.1093/bioinformatics/btz790","mag":"2980497717","pmid":"https://pubmed.ncbi.nlm.nih.gov/31626280"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz790","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz790","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1577/32793963/btz790.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1577/32793963/btz790.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100345817","display_name":"Yu Liu","orcid":"https://orcid.org/0000-0002-6494-5092"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Liu","raw_affiliation_strings":["Department of Statistical Science , School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, China","State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"Department of Statistical Science , School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078212239","display_name":"Paul W. Bible","orcid":"https://orcid.org/0000-0001-9969-4492"},"institutions":[{"id":"https://openalex.org/I917324061","display_name":"Marian University - Indiana","ror":"https://ror.org/00p4ywg82","country_code":"US","type":"education","lineage":["https://openalex.org/I917324061"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Paul W Bible","raw_affiliation_strings":["College of Arts and Sciences, Marian University , Indianapolis, IN 46222, USA","State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"College of Arts and Sciences, Marian University , Indianapolis, IN 46222, USA","institution_ids":["https://openalex.org/I917324061"]},{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043915667","display_name":"Bin Zou","orcid":"https://orcid.org/0000-0001-9243-9923"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Zou","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016923575","display_name":"Qiaoxing Liang","orcid":"https://orcid.org/0000-0002-2876-3013"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiaoxing Liang","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054446049","display_name":"Cong Dong","orcid":"https://orcid.org/0000-0001-7581-7160"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cong Dong","raw_affiliation_strings":["College of Chemistry, Sun Yat-Sen University , Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sun Yat-Sen University , Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102449099","display_name":"Xiaofeng Wen","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofeng Wen","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380300","display_name":"Yan Li","orcid":"https://orcid.org/0000-0002-0873-8195"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021119188","display_name":"Xiaofei Ge","orcid":"https://orcid.org/0000-0002-0886-2567"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofei Ge","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027549114","display_name":"Xifang Li","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xifang Li","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108714414","display_name":"Xiuli Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiuli Deng","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062373772","display_name":"Rong Ma","orcid":"https://orcid.org/0000-0002-9248-8503"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Ma","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072757788","display_name":"Shixin Guo","orcid":"https://orcid.org/0000-0001-8393-9352"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shixin Guo","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038282753","display_name":"Juanran Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juanran Liang","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344090","display_name":"Tingting Chen","orcid":"https://orcid.org/0000-0001-5191-8784"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting Chen","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068841861","display_name":"Wenliang Pan","orcid":"https://orcid.org/0009-0003-5965-2126"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenliang Pan","raw_affiliation_strings":["Department of Statistical Science , School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"Department of Statistical Science , School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100399697","display_name":"Lixin Liu","orcid":"https://orcid.org/0000-0001-6133-4977"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lixin Liu","raw_affiliation_strings":["College of Chemistry, Sun Yat-Sen University , Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sun Yat-Sen University , Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344323","display_name":"Wei Chen","orcid":"https://orcid.org/0000-0001-7196-8703"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210130600","display_name":"Children's Hospital of Pittsburgh","ror":"https://ror.org/03763ep67","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210130600","https://openalex.org/I4210134769"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Chen","raw_affiliation_strings":["Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh , Pittsburgh, PA 15261, USA","Division of Pulmonary Medicine, Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh , Pittsburgh, PA 15224, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh , Pittsburgh, PA 15261, USA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Division of Pulmonary Medicine, Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh , Pittsburgh, PA 15224, USA","institution_ids":["https://openalex.org/I4210130600","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100329544","display_name":"Xueqin Wang","orcid":"https://orcid.org/0000-0001-5205-9950"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xueqin Wang","raw_affiliation_strings":["Department of Statistical Science , School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, China","Southern China Research Center of Statistical Science, Sun Yat-Sen University , Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"Department of Statistical Science , School of Mathematics, Sun Yat-Sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Southern China Research Center of Statistical Science, Sun Yat-Sen University , Guangzhou 510275, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100461545","display_name":"Lai Wei","orcid":"https://orcid.org/0000-0002-3300-8506"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lai Wei","raw_affiliation_strings":["State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center , Sun Yat-sen University, Guangzhou 510060, China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5100329544","https://openalex.org/A5100461545"],"corresponding_institution_ids":["https://openalex.org/I157773358"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.09815782,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"36","issue":"5","first_page":"1577","last_page":"1583"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9441999793052673,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.895506739616394},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7243250608444214},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.687451958656311},{"id":"https://openalex.org/keywords/subtraction","display_name":"Subtraction","score":0.638707160949707},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6098874807357788},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5953701138496399},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5227018594741821},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5065320730209351},{"id":"https://openalex.org/keywords/unifrac","display_name":"UniFrac","score":0.49862003326416016},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47137296199798584},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46320831775665283},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.43644705414772034},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.28920191526412964},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2622615098953247},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2120305597782135},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18577274680137634},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1272624135017395},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1251586377620697},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09122970700263977}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.895506739616394},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7243250608444214},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.687451958656311},{"id":"https://openalex.org/C68060419","wikidata":"https://www.wikidata.org/wiki/Q40754","display_name":"Subtraction","level":2,"score":0.638707160949707},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6098874807357788},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5953701138496399},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5227018594741821},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5065320730209351},{"id":"https://openalex.org/C151437367","wikidata":"https://www.wikidata.org/wiki/Q7884646","display_name":"UniFrac","level":4,"score":0.49862003326416016},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47137296199798584},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46320831775665283},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.43644705414772034},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.28920191526412964},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2622615098953247},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2120305597782135},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18577274680137634},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1272624135017395},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1251586377620697},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09122970700263977},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz790","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz790","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1577/32793963/btz790.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31626280","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31626280","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:scholarship.depauw.edu:compsci_facpubs-1018","is_oa":false,"landing_page_url":"https://scholarship.depauw.edu/compsci_facpubs/18","pdf_url":null,"source":{"id":"https://openalex.org/S4377196659","display_name":"Scholarly and Creative Works from DePauw University (DePauw University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12113309","host_organization_name":"DePauw University","host_organization_lineage":["https://openalex.org/I12113309"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Science Faculty publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz790","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz790","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1577/32793963/btz790.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4245771672","display_name":null,"funder_award_id":"81570828","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4631027124","display_name":null,"funder_award_id":"11771462","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7363171003","display_name":null,"funder_award_id":"2015CB964601","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2980497717.pdf","grobid_xml":"https://content.openalex.org/works/W2980497717.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1703384511","https://openalex.org/W1926422794","https://openalex.org/W1988460088","https://openalex.org/W2003347102","https://openalex.org/W2017917533","https://openalex.org/W2045204781","https://openalex.org/W2055043387","https://openalex.org/W2083922582","https://openalex.org/W2102278945","https://openalex.org/W2103441770","https://openalex.org/W2107697078","https://openalex.org/W2115699469","https://openalex.org/W2124985265","https://openalex.org/W2131026689","https://openalex.org/W2131271579","https://openalex.org/W2135144484","https://openalex.org/W2143842034","https://openalex.org/W2144632955","https://openalex.org/W2159954944","https://openalex.org/W2170486072","https://openalex.org/W2177333410","https://openalex.org/W2306621981","https://openalex.org/W2337747100","https://openalex.org/W2525954034","https://openalex.org/W2580264477","https://openalex.org/W2736665789","https://openalex.org/W2747877955","https://openalex.org/W2773707700","https://openalex.org/W2773939681","https://openalex.org/W2794083477","https://openalex.org/W2883814206","https://openalex.org/W2910615673","https://openalex.org/W2920716817","https://openalex.org/W2949351818","https://openalex.org/W2951676949","https://openalex.org/W2952152744","https://openalex.org/W6677003073"],"related_works":["https://openalex.org/W2105937617","https://openalex.org/W2038838030","https://openalex.org/W2165065263","https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3139084279","https://openalex.org/W2806408903"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
