{"id":"https://openalex.org/W2980668222","doi":"https://doi.org/10.1093/bioinformatics/btz777","title":"Mat_peptide: comprehensive annotation of mature peptides from polyproteins in five virus families","display_name":"Mat_peptide: comprehensive annotation of mature peptides from polyproteins in five virus families","publication_year":2019,"publication_date":"2019-10-10","ids":{"openalex":"https://openalex.org/W2980668222","doi":"https://doi.org/10.1093/bioinformatics/btz777","mag":"2980668222","pmid":"https://pubmed.ncbi.nlm.nih.gov/31609421"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz777","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz777","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1627/38712548/btz777.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1627/38712548/btz777.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069093962","display_name":"Christopher N. Larsen","orcid":"https://orcid.org/0000-0002-1051-5767"},"institutions":[{"id":"https://openalex.org/I4210119740","display_name":"Vecna Technologies (United States)","ror":"https://ror.org/031r5nr48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119740"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher N Larsen","raw_affiliation_strings":["Vecna Technologies , Inc., Greenbelt, MD 20770"],"affiliations":[{"raw_affiliation_string":"Vecna Technologies , Inc., Greenbelt, MD 20770","institution_ids":["https://openalex.org/I4210119740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101634469","display_name":"Guangyu Sun","orcid":"https://orcid.org/0000-0001-9101-0463"},"institutions":[{"id":"https://openalex.org/I4210119740","display_name":"Vecna Technologies (United States)","ror":"https://ror.org/031r5nr48","country_code":"US","type":"company","lineage":["https://openalex.org/I4210119740"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guangyu Sun","raw_affiliation_strings":["Vecna Technologies , Inc., Greenbelt, MD 20770"],"affiliations":[{"raw_affiliation_string":"Vecna Technologies , Inc., Greenbelt, MD 20770","institution_ids":["https://openalex.org/I4210119740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040413222","display_name":"Xiaomei Li","orcid":"https://orcid.org/0000-0003-3362-148X"},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaomei Li","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109045250","display_name":"Sam Zaremba","orcid":null},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sam Zaremba","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103064397","display_name":"Hongtao Zhao","orcid":"https://orcid.org/0000-0002-9318-1052"},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongtao Zhao","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053671956","display_name":"Sherry He","orcid":"https://orcid.org/0000-0003-2032-8006"},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sherry He","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073809871","display_name":"Li\u2010Wei Zhou","orcid":"https://orcid.org/0000-0002-2851-2839"},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liwei Zhou","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088808481","display_name":"Sanjeev Kumar","orcid":"https://orcid.org/0000-0002-1171-9606"},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanjeev Kumar","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064642785","display_name":"Vince Desborough","orcid":null},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vince Desborough","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113496978","display_name":"Edward B. Klem","orcid":null},"institutions":[{"id":"https://openalex.org/I2948394018","display_name":"Northrop Grumman (United States)","ror":"https://ror.org/05kewds18","country_code":"US","type":"company","lineage":["https://openalex.org/I2948394018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward B Klem","raw_affiliation_strings":["Northrop Grumman , Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"Northrop Grumman , Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I2948394018"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5069093962"],"corresponding_institution_ids":["https://openalex.org/I4210119740"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4392,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.69952721,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"5","first_page":"1627","last_page":"1628"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10166","display_name":"Mosquito-borne diseases and control","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10166","display_name":"Mosquito-borne diseases and control","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/polyproteins","display_name":"Polyproteins","score":0.8902187347412109},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.648385226726532},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5159409642219543},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5006370544433594},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.45901361107826233},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.32136785984039307},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24606066942214966},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12571465969085693},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0756395161151886},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.0664956271648407}],"concepts":[{"id":"https://openalex.org/C2910895815","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Polyproteins","level":4,"score":0.8902187347412109},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.648385226726532},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5159409642219543},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5006370544433594},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.45901361107826233},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.32136785984039307},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24606066942214966},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12571465969085693},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0756395161151886},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0664956271648407}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020815","descriptor_name":"Polyproteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020815","descriptor_name":"Polyproteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020815","descriptor_name":"Polyproteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz777","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz777","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1627/38712548/btz777.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31609421","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31609421","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8215913","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8215913","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz777","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz777","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1627/38712548/btz777.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7922068894","display_name":null,"funder_award_id":"HHSN272201400028C","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2980668222.pdf","grobid_xml":"https://content.openalex.org/works/W2980668222.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2021210077","https://openalex.org/W2023693934","https://openalex.org/W2082809561","https://openalex.org/W2106882534","https://openalex.org/W2150934173","https://openalex.org/W2173732482","https://openalex.org/W2229167533","https://openalex.org/W2581666327","https://openalex.org/W2753748510","https://openalex.org/W2949123151","https://openalex.org/W4239275885","https://openalex.org/W4251079740"],"related_works":["https://openalex.org/W2003194288","https://openalex.org/W2513589746","https://openalex.org/W2153919606","https://openalex.org/W2213189664","https://openalex.org/W2074002899","https://openalex.org/W2062254828","https://openalex.org/W4237480606","https://openalex.org/W2936968863","https://openalex.org/W2941821699","https://openalex.org/W1971792277"],"abstract_inverted_index":{"The":[0],"data":[1],"are":[2],"available":[3],"at":[4,13],"the":[5,11],"Virus":[6],"Pathogen":[7],"Resource":[8],"https://www.viprbrc.org,":[9],"and":[10],"software":[12],"https://github.com/VirusBRC/vipr_mat_peptide.":[14]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
