{"id":"https://openalex.org/W2979835214","doi":"https://doi.org/10.1093/bioinformatics/btz752","title":"SPARSim single cell: a count data simulator for scRNA-seq data","display_name":"SPARSim single cell: a count data simulator for scRNA-seq data","publication_year":2019,"publication_date":"2019-10-04","ids":{"openalex":"https://openalex.org/W2979835214","doi":"https://doi.org/10.1093/bioinformatics/btz752","mag":"2979835214","pmid":"https://pubmed.ncbi.nlm.nih.gov/31598633"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz752","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz752","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1468/32793842/btz752.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1468/32793842/btz752.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010617664","display_name":"Giacomo Baruzzo","orcid":"https://orcid.org/0000-0001-6129-5007"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giacomo Baruzzo","raw_affiliation_strings":["Department of Information Engineering, University of Padova , Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova , Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081073083","display_name":"Ilaria Patuzzi","orcid":"https://orcid.org/0000-0002-4793-106X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I4210139787","display_name":"Istituto Zooprofilattico Sperimentale delle Venezie","ror":"https://ror.org/04n1mwm18","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210139787"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ilaria Patuzzi","raw_affiliation_strings":["Department of Information Engineering, University of Padova , Padova, Italy","Microbial Ecology Unit, Istituto Zooprofilattico Sperimentale delle Venezie , Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova , Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Microbial Ecology Unit, Istituto Zooprofilattico Sperimentale delle Venezie , Padova, Italy","institution_ids":["https://openalex.org/I4210139787"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077821068","display_name":"Barbara Di Camillo","orcid":"https://orcid.org/0000-0001-8415-4688"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Barbara Di Camillo","raw_affiliation_strings":["CRIBI Innovative Biotechnology Center, University of Padova , Padova, Italy","Department of Information Engineering, University of Padova , Padova, Italy"],"affiliations":[{"raw_affiliation_string":"CRIBI Innovative Biotechnology Center, University of Padova , Padova, Italy","institution_ids":[]},{"raw_affiliation_string":"Department of Information Engineering, University of Padova , Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5077821068"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8037,"has_fulltext":false,"cited_by_count":74,"citation_normalized_percentile":{"value":0.8576368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"5","first_page":"1468","last_page":"1475"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9807000160217285,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/count-data","display_name":"Count data","score":0.6696460843086243},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6366481184959412},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.3515999913215637},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2508271336555481},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1527390480041504}],"concepts":[{"id":"https://openalex.org/C33643355","wikidata":"https://www.wikidata.org/wiki/Q5176731","display_name":"Count data","level":3,"score":0.6696460843086243},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6366481184959412},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.3515999913215637},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2508271336555481},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1527390480041504},{"id":"https://openalex.org/C100906024","wikidata":"https://www.wikidata.org/wiki/Q205692","display_name":"Poisson distribution","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btz752","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz752","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1468/32793842/btz752.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31598633","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31598633","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research.unipd.it:11577/3317987","is_oa":true,"landing_page_url":"https://hdl.handle.net/11577/3317987","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100861","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100861","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz752","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz752","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/5/1468/32793842/btz752.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/1","score":0.6399999856948853,"display_name":"No poverty"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979835214.pdf","grobid_xml":"https://content.openalex.org/works/W2979835214.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W839653734","https://openalex.org/W1967327758","https://openalex.org/W1968458420","https://openalex.org/W1979283544","https://openalex.org/W1988391018","https://openalex.org/W2025828346","https://openalex.org/W2033072655","https://openalex.org/W2054576015","https://openalex.org/W2055027171","https://openalex.org/W2084942072","https://openalex.org/W2102212449","https://openalex.org/W2110768394","https://openalex.org/W2112408821","https://openalex.org/W2114104545","https://openalex.org/W2130695933","https://openalex.org/W2134526812","https://openalex.org/W2135937351","https://openalex.org/W2137526110","https://openalex.org/W2138207763","https://openalex.org/W2143787026","https://openalex.org/W2145416275","https://openalex.org/W2145748272","https://openalex.org/W2152239989","https://openalex.org/W2152692691","https://openalex.org/W2179438025","https://openalex.org/W2195294260","https://openalex.org/W2337733832","https://openalex.org/W2343956310","https://openalex.org/W2511896561","https://openalex.org/W2566567183","https://openalex.org/W2605611918","https://openalex.org/W2612502013","https://openalex.org/W2617939744","https://openalex.org/W2734950973","https://openalex.org/W2769542288","https://openalex.org/W2772624269","https://openalex.org/W2775443868","https://openalex.org/W2788908087","https://openalex.org/W2792479311","https://openalex.org/W2792647356","https://openalex.org/W2794891507","https://openalex.org/W2803656008","https://openalex.org/W2809616137","https://openalex.org/W2885927965","https://openalex.org/W2900850487","https://openalex.org/W2904250115","https://openalex.org/W2927507212","https://openalex.org/W2949067670","https://openalex.org/W2949275240","https://openalex.org/W2949829455","https://openalex.org/W2949960840","https://openalex.org/W2950541340","https://openalex.org/W2951084686","https://openalex.org/W2951506174","https://openalex.org/W2951638683","https://openalex.org/W2952109315","https://openalex.org/W4205256993","https://openalex.org/W6680041078","https://openalex.org/W6682016998","https://openalex.org/W6749351729"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2974887920","https://openalex.org/W4214644238","https://openalex.org/W2971731486","https://openalex.org/W31711046","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2910481370","https://openalex.org/W4396701345"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
