{"id":"https://openalex.org/W2979678807","doi":"https://doi.org/10.1093/bioinformatics/btz738","title":"Topology-based classification of tetrads and quadruplex structures","display_name":"Topology-based classification of tetrads and quadruplex structures","publication_year":2019,"publication_date":"2019-09-26","ids":{"openalex":"https://openalex.org/W2979678807","doi":"https://doi.org/10.1093/bioinformatics/btz738","mag":"2979678807","pmid":"https://pubmed.ncbi.nlm.nih.gov/31588513"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btz738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz738","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1129/32527729/btz738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1129/32527729/btz738.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018487426","display_name":"Mariusz Popenda","orcid":"https://orcid.org/0000-0001-9965-0430"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mariusz Popenda","raw_affiliation_strings":["Department of Structural Bioinformatics, Institute of Bioorganic Chemistry , Polish Academy of Sciences, Poznan 61-704, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Structural Bioinformatics, Institute of Bioorganic Chemistry , Polish Academy of Sciences, Poznan 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074283314","display_name":"Joanna Miskiewicz","orcid":"https://orcid.org/0000-0002-4563-7481"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Joanna Miskiewicz","raw_affiliation_strings":["Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology , Poznan 60-965, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology , Poznan 60-965, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066310992","display_name":"Joanna Sarzy\u0144ska","orcid":"https://orcid.org/0000-0002-0500-2238"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Joanna Sarzynska","raw_affiliation_strings":["Department of Structural Bioinformatics, Institute of Bioorganic Chemistry , Polish Academy of Sciences, Poznan 61-704, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Structural Bioinformatics, Institute of Bioorganic Chemistry , Polish Academy of Sciences, Poznan 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091783406","display_name":"Tomasz \u017bok","orcid":"https://orcid.org/0000-0003-4103-9238"},"institutions":[{"id":"https://openalex.org/I4210117901","display_name":"Poznan Supercomputing and Networking Center","ror":"https://ror.org/025cj6e44","country_code":"PL","type":"nonprofit","lineage":["https://openalex.org/I4210117901","https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Tomasz Zok","raw_affiliation_strings":["Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology , Poznan 60-965, Poland","Poznan Supercomputing and Networking Center , Poznan 61-139, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology , Poznan 60-965, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Poznan Supercomputing and Networking Center , Poznan 61-139, Poland","institution_ids":["https://openalex.org/I4210117901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056736610","display_name":"Marta Szachniuk","orcid":"https://orcid.org/0000-0002-8724-7908"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Marta Szachniuk","raw_affiliation_strings":["Department of Structural Bioinformatics, Institute of Bioorganic Chemistry , Polish Academy of Sciences, Poznan 61-704, Poland","Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology , Poznan 60-965, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Structural Bioinformatics, Institute of Bioorganic Chemistry , Polish Academy of Sciences, Poznan 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology , Poznan 60-965, Poland","institution_ids":["https://openalex.org/I46597724"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056736610"],"corresponding_institution_ids":["https://openalex.org/I4210152414","https://openalex.org/I46597724"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1933,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.78932667,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"36","issue":"4","first_page":"1129","last_page":"1134"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6476898193359375},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.45485591888427734},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.4388901889324188},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40738821029663086},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40483325719833374},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3572527766227722},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3309231400489807},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21994507312774658},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21089816093444824}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6476898193359375},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.45485591888427734},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.4388901889324188},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40738821029663086},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40483325719833374},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3572527766227722},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3309231400489807},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21994507312774658},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21089816093444824},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btz738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz738","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1129/32527729/btz738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31588513","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31588513","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7031778","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7031778","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btz738","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btz738","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/4/1129/32527729/btz738.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979678807.pdf","grobid_xml":"https://content.openalex.org/works/W2979678807.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W90077054","https://openalex.org/W1450574606","https://openalex.org/W1672171675","https://openalex.org/W1829370794","https://openalex.org/W1914649288","https://openalex.org/W1964578544","https://openalex.org/W2007812774","https://openalex.org/W2014496495","https://openalex.org/W2034512710","https://openalex.org/W2042994965","https://openalex.org/W2061103938","https://openalex.org/W2068310419","https://openalex.org/W2103848900","https://openalex.org/W2110745457","https://openalex.org/W2111061634","https://openalex.org/W2117559345","https://openalex.org/W2122846880","https://openalex.org/W2130479394","https://openalex.org/W2133279885","https://openalex.org/W2162078089","https://openalex.org/W2171830519","https://openalex.org/W2172060739","https://openalex.org/W2222621298","https://openalex.org/W2278089208","https://openalex.org/W2290989326","https://openalex.org/W2403395478","https://openalex.org/W2548306987","https://openalex.org/W2558916969","https://openalex.org/W2561964990","https://openalex.org/W2617151789","https://openalex.org/W2619324489","https://openalex.org/W2622581388","https://openalex.org/W2732296396","https://openalex.org/W2738058938","https://openalex.org/W2745257241","https://openalex.org/W2766679495","https://openalex.org/W2772605365","https://openalex.org/W2799989945","https://openalex.org/W2889015090","https://openalex.org/W2896826736","https://openalex.org/W2902814834","https://openalex.org/W2906248005","https://openalex.org/W2916108311","https://openalex.org/W2923522997","https://openalex.org/W2950772678","https://openalex.org/W3013911795","https://openalex.org/W6637288986","https://openalex.org/W6654190666","https://openalex.org/W6730879846"],"related_works":["https://openalex.org/W1971444612","https://openalex.org/W1543504406","https://openalex.org/W633173308","https://openalex.org/W2383750441","https://openalex.org/W1572021523","https://openalex.org/W2802691951","https://openalex.org/W2061946247","https://openalex.org/W2135990064","https://openalex.org/W2085406081","https://openalex.org/W2011393572"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
